Standard name | |
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Human Ortholog | |
Description | Ubiquitin-conjugating enzyme variant; involved in error-free postreplication repair; forms a heteromeric complex with Ubc13p, an active ubiquitin-conjugating enzyme; cooperates with chromatin-associated RING finger proteins, Rad18p and Rad5p; protein abundance increases in response to DNA replication stress |
ensLOC | DeepLoc | |||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 2 | 0 | 1 | 0 | 2 | 0 | 0 | 0 | 1 | 0 | 0 | 2 | 1 | 0 | 0 | 1 | 2 |
Bud | 0 | 0 | 11 | 1 | 0 | 2 | 7 | 7 | 1 | 5 | 2 | 4 | 1 | 0 | 3 | 0 | 0 | 0 | 1 | 1 | 1 | 2 | 5 | 3 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 16 | 14 | 3 | 5 | 7 | 11 | 9 | 11 | 12 | 13 | 19 | 24 | 31 | 28 | 36 | 25 | 27 | 19 | 0 | 0 | 0 | 1 | 0 | 0 |
Cytoplasm | 1010 | 586 | 519 | 311 | 438 | 317 | 566 | 455 | 328 | 425 | 316 | 401 | 685 | 654 | 761 | 312 | 234 | 229 | 997 | 566 | 536 | 437 | 553 | 515 |
Endoplasmic Reticulum | 4 | 1 | 4 | 1 | 4 | 4 | 22 | 15 | 7 | 18 | 12 | 19 | 8 | 0 | 1 | 13 | 7 | 6 | 1 | 1 | 2 | 4 | 9 | 8 |
Endosome | 1 | 0 | 1 | 0 | 1 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 2 | 0 | 1 | 1 | 7 | 3 | 3 | 3 | 3 | 2 |
Golgi | 2 | 3 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 1 | 0 | 1 | 2 | 2 | 1 | 3 | 3 | 3 |
Mitochondria | 8 | 2 | 10 | 17 | 14 | 36 | 53 | 60 | 81 | 80 | 78 | 104 | 0 | 0 | 2 | 3 | 1 | 3 | 3 | 2 | 5 | 1 | 1 | 0 |
Nucleus | 8 | 2 | 4 | 1 | 2 | 4 | 10 | 8 | 4 | 7 | 8 | 9 | 2 | 4 | 0 | 2 | 2 | 2 | 0 | 3 | 0 | 1 | 1 | 2 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 1 | 3 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 2 | 1 | 0 |
Nucleolus | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 2 |
Vac/Vac Membrane | 9 | 2 | 0 | 2 | 6 | 2 | 9 | 44 | 13 | 23 | 9 | 20 | 2 | 2 | 7 | 12 | 5 | 9 | 3 | 4 | 7 | 3 | 3 | 3 |
Unique Cell Count | 1035 | 594 | 530 | 320 | 459 | 350 | 644 | 571 | 406 | 532 | 399 | 531 | 696 | 659 | 771 | 333 | 245 | 245 | 1030 | 593 | 566 | 465 | 594 | 549 |
Labelled Cell Count | 1058 | 610 | 553 | 339 | 472 | 379 | 681 | 602 | 446 | 573 | 445 | 585 | 731 | 689 | 812 | 370 | 277 | 271 | 1030 | 593 | 566 | 465 | 594 | 549 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 10.1 | 12.7 | 6.1 | 7.7 | 8.7 | 7.9 | 8.3 | 8.4 | 7.8 | 8.2 | 8.2 | 8.2 | 12.2 | 12.5 | 12.7 | 21.2 | 20.2 | 20.3 | 12.1 | 11.9 | 11.7 |
Std Deviation (1e-4) | 1.6 | 2.2 | 1.1 | 1.5 | 1.6 | 1.5 | 1.6 | 1.6 | 1.5 | 1.6 | 1.7 | 1.6 | 2.0 | 2.2 | 2.4 | 6.1 | 5.3 | 5.1 | 2.6 | 2.6 | 2.0 |
Intensity Change (Log2) | – | – | – | 0.32 | 0.51 | 0.38 | 0.43 | 0.46 | 0.34 | 0.42 | 0.42 | 0.42 | 0.99 | 1.03 | 1.05 | 1.79 | 1.72 | 1.73 | 0.99 | 0.96 | 0.93 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | -3.1 | -1.8 | -1.4 | -1.1 | -2.5 | -1.5 | -2.0 | -1.8 | -3.4 | 0 | -2.9 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0 | 0 | 3.0 | 1.4 | 2.0 | 2.9 | 2.5 | 4.2 | 4.1 | 4.1 | 4.0 | 4.3 | 5.6 | 7.0 | 5.6 |
Cytoplasm | -0.7 | -2.2 | -4.9 | -6.5 | -9.5 | -8.9 | -9.4 | -9.4 | -10.8 | 0.6 | 2.0 | 1.1 | -3.2 | -1.9 | -3.1 |
Endoplasmic Reticulum | 0 | 0 | 0 | 3.1 | 2.4 | 0 | 3.0 | 2.6 | 3.2 | 0.7 | 0 | 0 | 3.2 | 0 | 0 |
Endosome | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 2.8 | 1.2 | 5.5 | 4.8 | 5.9 | 9.2 | 7.7 | 9.1 | 9.3 | 0 | 0 | 0 | -1.2 | 0 | 0 |
Nucleus | 0 | 0 | 0 | 1.3 | 1.0 | 0 | 0.9 | 1.7 | 1.4 | 0 | 0 | 0 | 0 | 0 | 0 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vacuole | 0 | 0 | 0 | 0 | 6.5 | 4.1 | 4.8 | 0 | 4.5 | 0 | 0 | 0 | 0 | 0 | 0 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 3.4991 | 4.7496 | 4.0448 | 3.7467 | 3.9674 | 4.043 | 2.8727 | 5.2744 | 4.4746 | 4.0793 | 4.3639 | 5.5359 | 3.6936 | 5.9698 | 4.4976 | 4.6238 | 3.2853 | 4.6153 |
Actin | 0.0441 | 0.0007 | 0.0057 | 0.0036 | 0.0004 | 0.0191 | 0.022 | 0.0002 | 0.01 | 0.0515 | 0.0003 | 0.0001 | 0.0327 | 0.0002 | 0.0023 | 0.0016 | 0.0023 | 0.001 |
Bud | 0.0006 | 0.0005 | 0.0003 | 0.0003 | 0 | 0.001 | 0.0003 | 0.0001 | 0.0005 | 0.0001 | 0.0001 | 0 | 0.0005 | 0 | 0.0006 | 0.0001 | 0.0002 | 0.0004 |
Bud Neck | 0.0018 | 0.0002 | 0.0004 | 0.0009 | 0.0004 | 0.0009 | 0.0013 | 0.0001 | 0.0007 | 0.0003 | 0.0004 | 0.0005 | 0.0022 | 0 | 0.0053 | 0.0002 | 0.0003 | 0.0006 |
Bud Periphery | 0.0008 | 0.0002 | 0.0002 | 0.0001 | 0 | 0.0007 | 0.0003 | 0 | 0.0004 | 0 | 0 | 0 | 0.0006 | 0 | 0.0009 | 0 | 0.0002 | 0.0004 |
Bud Site | 0.0038 | 0.0018 | 0.0011 | 0.001 | 0 | 0.0004 | 0.0016 | 0.0004 | 0.0016 | 0.0002 | 0 | 0 | 0.0046 | 0.0001 | 0.0062 | 0.0002 | 0.0002 | 0.0022 |
Cell Periphery | 0.0003 | 0.0001 | 0.0001 | 0.0001 | 0 | 0.0001 | 0.0002 | 0.0001 | 0.0001 | 0 | 0 | 0 | 0.0004 | 0 | 0.0004 | 0.0001 | 0.0001 | 0.0001 |
Cytoplasm | 0.7053 | 0.9672 | 0.8798 | 0.8722 | 0.9874 | 0.8698 | 0.6482 | 0.9457 | 0.9067 | 0.9328 | 0.9965 | 0.989 | 0.8611 | 0.9819 | 0.9231 | 0.9542 | 0.8435 | 0.9191 |
Cytoplasmic Foci | 0.0427 | 0.0027 | 0.0209 | 0.0084 | 0.0023 | 0.0095 | 0.072 | 0.0013 | 0.0213 | 0.0013 | 0.0005 | 0.0019 | 0.0233 | 0.0021 | 0.0139 | 0.0034 | 0.0056 | 0.0134 |
Eisosomes | 0.0003 | 0 | 0.0002 | 0 | 0 | 0.0001 | 0.0001 | 0 | 0.0001 | 0 | 0 | 0 | 0.0011 | 0 | 0.0001 | 0 | 0.0001 | 0 |
Endoplasmic Reticulum | 0.0107 | 0.0019 | 0.004 | 0.0034 | 0.0021 | 0.0028 | 0.0045 | 0.0009 | 0.0019 | 0.0013 | 0.0003 | 0.0009 | 0.0029 | 0.0008 | 0.0122 | 0.0109 | 0.0026 | 0.0014 |
Endosome | 0.0412 | 0.0014 | 0.0293 | 0.0507 | 0.0006 | 0.0218 | 0.0506 | 0.0004 | 0.0132 | 0.0003 | 0.0001 | 0.0005 | 0.0088 | 0.0007 | 0.0068 | 0.0018 | 0.0114 | 0.0293 |
Golgi | 0.0135 | 0.0005 | 0.0059 | 0.0064 | 0 | 0.0278 | 0.0197 | 0 | 0.007 | 0.0009 | 0 | 0 | 0.0084 | 0.0001 | 0.0017 | 0.0003 | 0.0168 | 0.0071 |
Lipid Particles | 0.0141 | 0.0001 | 0.0028 | 0.0063 | 0 | 0.0088 | 0.0274 | 0 | 0.0072 | 0.0002 | 0 | 0 | 0.0119 | 0.0001 | 0.0109 | 0.0002 | 0.0029 | 0.0014 |
Mitochondria | 0.0107 | 0.0068 | 0.0224 | 0.0025 | 0 | 0.0067 | 0.0213 | 0 | 0.0016 | 0.0002 | 0 | 0 | 0.0057 | 0 | 0.0017 | 0.0001 | 0.1029 | 0.0055 |
None | 0.0379 | 0.0118 | 0.0183 | 0.0311 | 0.0049 | 0.0082 | 0.0964 | 0.0492 | 0.0105 | 0.0074 | 0.0011 | 0.0057 | 0.0117 | 0.0129 | 0.0042 | 0.0241 | 0.0017 | 0.0068 |
Nuclear Periphery | 0.026 | 0.0008 | 0.0019 | 0.0043 | 0.0004 | 0.0024 | 0.0019 | 0.0003 | 0.0004 | 0.0002 | 0.0001 | 0.0002 | 0.0009 | 0.0002 | 0.0021 | 0.0009 | 0.0009 | 0.0007 |
Nucleolus | 0.001 | 0 | 0.0001 | 0.0002 | 0 | 0.0004 | 0.0003 | 0 | 0.0002 | 0 | 0 | 0 | 0.0002 | 0 | 0.0009 | 0 | 0 | 0.0002 |
Nucleus | 0.0144 | 0.002 | 0.0013 | 0.0028 | 0.0011 | 0.0017 | 0.0016 | 0.0008 | 0.0008 | 0.0007 | 0.0005 | 0.0008 | 0.001 | 0.0004 | 0.001 | 0.0009 | 0.0009 | 0.0009 |
Peroxisomes | 0.0141 | 0.0004 | 0.0029 | 0.0009 | 0 | 0.0057 | 0.0185 | 0 | 0.0109 | 0.0021 | 0 | 0 | 0.0184 | 0 | 0.0015 | 0 | 0.0049 | 0.0029 |
Punctate Nuclear | 0.0083 | 0.0003 | 0.0009 | 0.0016 | 0.0002 | 0.0111 | 0.0059 | 0.0002 | 0.0041 | 0.0001 | 0 | 0.0001 | 0.0015 | 0.0001 | 0.0009 | 0.0003 | 0.0001 | 0.0008 |
Vacuole | 0.0049 | 0.0004 | 0.0011 | 0.0021 | 0.0001 | 0.0006 | 0.0042 | 0.0003 | 0.0006 | 0.0001 | 0.0001 | 0.0001 | 0.0016 | 0.0002 | 0.0023 | 0.0006 | 0.0019 | 0.0035 |
Vacuole Periphery | 0.0034 | 0.0001 | 0.0005 | 0.0012 | 0 | 0.0006 | 0.0017 | 0 | 0.0002 | 0 | 0 | 0 | 0.0004 | 0 | 0.001 | 0.0001 | 0.0007 | 0.0021 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 46.6415 | 33.3557 | 30.0552 | 46.9317 | 48.3782 | 34.6288 | 44.5664 | 59.3457 | 49.2253 | 45.9098 |
Translational Efficiency | 2.1075 | 2.9388 | 3.0167 | 2.0893 | 1.6448 | 3.7205 | 2.5729 | 2.0122 | 2.5223 | 2.4605 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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