Standard name
Human Ortholog
Description Peroxisomal ubiquitin conjugating enzyme; required for peroxisomal matrix protein import and peroxisome biogenesis
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Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0.05 0 0 0 0 0 0 0 0 0 0 0.16 0.06 0.05 0 0 0 0.07 0.12 0.09 0.09 0.13 0.16
Bud 0.05 0.07 0.17 0.11 0.14 0.14 0.11 0.12 0.13 0.1 0.13 0.13 0.05 0 0.06 0.1 0.09 0.08 0 0 0 0 0 0
Bud Neck 0.06 0 0.06 0 0 0 0 0 0 0 0 0 0.1 0.05 0 0 0 0 0 0 0 0.05 0 0
Bud Site 0 0 0 0 0 0.06 0.06 0 0 0 0 0 0 0 0 0 0 0.05 – – – – – –
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm 0.45 0.42 0.21 0.26 0.24 0.26 0.24 0.28 0.3 0.37 0.31 0.31 0.4 0.42 0.42 0.09 0.07 0.09 0.11 0.1 0 0.06 0.09 0.11
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Endosome 0.06 0.07 0 0.05 0.09 0 0 0 0 0 0 0 0 0.05 0.12 0.2 0.2 0.2 0.16 0.16 0.18 0.15 0.14 0.1
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0.16 0.2 0.27 0.28 0.34 0.57 0.56 0.48 0.62 0.53 0.69 0.68 0 0 0 0.16 0.08 0.11 0.19 0.21 0.13 0.22 0.19 0.2
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0.06 0.2 0.22 0.34 0.33 0.15 0.13 0.1 0.08 0.07 0.06 0.07 0.08 0.15 0.14 0.27 0.37 0.39 0.28 0.18 0.44 0.29 0.27 0.26
SpindlePole 0.32 0.1 0.28 0.26 0.3 0.22 0.24 0.27 0.19 0.23 0.11 0.12 0.36 0.4 0.36 0.46 0.42 0.48 0.11 0.09 0.08 0.06 0.08 0.05
Vac/Vac Membrane 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 2 8 2 2 0 7 1 0 0 0 0 2 50 27 23 6 4 13 20 30 19 26 60 83
Bud 11 12 27 31 61 72 73 93 61 55 52 73 17 14 29 43 39 33 4 7 3 7 7 12
Bud Neck 14 2 9 4 8 9 13 16 4 5 4 2 30 20 22 10 12 7 7 9 4 15 17 15
Bud Site 8 2 6 10 11 31 38 29 14 6 13 14 9 7 4 10 16 22 – – – – – –
Cell Periphery 1 0 0 0 0 0 3 0 0 1 1 3 3 0 1 0 0 0 0 1 0 2 1 7
Cytoplasm 99 70 34 72 102 131 163 219 134 197 129 179 125 175 212 40 31 38 31 25 5 18 42 53
Endoplasmic Reticulum 1 4 2 3 0 1 0 3 0 0 0 1 4 4 10 3 10 5 0 1 0 2 3 2
Endosome 13 12 3 13 41 7 10 20 6 9 2 4 8 21 61 84 82 85 45 42 38 43 66 50
Golgi 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 6 6 4 2 4 0 3 2 4
Mitochondria 35 33 43 78 147 293 373 375 281 286 286 388 6 1 3 70 32 48 53 55 29 64 93 99
Nucleus 0 0 0 1 2 4 4 4 2 1 1 1 0 0 0 7 5 9 0 0 0 0 0 0
Nuclear Periphery 0 0 1 0 0 0 1 1 0 1 0 0 0 0 0 4 4 2 0 0 0 0 0 0
Nucleolus 0 0 2 2 0 2 5 3 2 2 0 0 1 0 2 15 10 11 0 1 0 1 0 0
Peroxisomes 14 34 35 94 144 78 85 80 34 38 23 42 24 63 71 115 154 169 80 46 94 86 128 130
SpindlePole 71 17 45 71 128 114 162 206 87 122 45 70 113 168 182 195 175 209 31 23 17 18 38 23
Vac/Vac Membrane 1 2 1 1 1 2 2 5 5 4 5 1 1 1 4 3 5 3 4 3 1 4 10 14
Unique Cell Count 221 166 159 277 433 510 672 774 452 536 412 570 313 417 510 426 416 432 287 258 217 297 482 505
Labelled Cell Count 271 197 210 382 645 751 933 1054 630 727 561 780 391 501 624 611 585 658 287 258 217 297 482 505


Peroxisomes

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 4.1 4.5 3.9 3.6 3.5 3.4 2.9 3.2 2.9 2.8 2.8 2.9 5.1 5.0 5.1 5.5 5.6 5.6 5.6 5.4 5.4
Std Deviation (1e-4) 1.1 0.9 1.0 1.1 1.5 1.3 1.0 1.2 1.1 1.0 0.8 0.7 0.7 0.8 0.9 1.1 1.2 1.3 1.5 1.3 1.4
Intensity Change (Log2) – – – -0.1 -0.12 -0.17 -0.43 -0.28 -0.4 -0.44 -0.46 -0.42 0.39 0.38 0.39 0.51 0.53 0.52 0.53 0.48 0.48


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Actin – – – – – – – – – – – – – – –
Bud – – – – – – – – – – – – – – –
Bud Neck – – – – – – – – – – – – – – –
Bud Site – – – – – – – – – – – – – – –
Cell Periphery – – – – – – – – – – – – – – –
Cyto – – – – – – – – – – – – – – –
Endoplasmic Reticulum – – – – – – – – – – – – – – –
Endosome – – – – – – – – – – – – – – –
Golgi – – – – – – – – – – – – – – –
Mitochondria – – – – – – – – – – – – – – –
Nuclear Periphery – – – – – – – – – – – – – – –
Nuc – – – – – – – – – – – – – – –
Nucleolus – – – – – – – – – – – – – – –
Peroxisomes – – – – – – – – – – – – – – –
SpindlePole – – – – – – – – – – – – – – –
Vac – – – – – – – – – – – – – – –
Cortical Patches – – – – – – – – – – – – – – –
Cytoplasm – – – – – – – – – – – – – – –
Nucleus – – – – – – – – – – – – – – –
Vacuole – – – – – – – – – – – – – – –

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration 0.9372 0.0806 1.0461 0.8222 0.4207 0.43 0.1753 0.8683 0.8285 0.5741 1.1143 0.9494 -1.2809 -0.8634 -1.2629 -1.1838 -1.4111 -1.0747
Actin 0.0725 0.0468 0.0482 0.0132 0.0156 0.0083 0.0395 0.0225 0.0275 0.0092 0.0264 0.0113 0.0506 0.0154 0.0218 0.0028 0.0101 0.0174
Bud 0.001 0.0035 0.0032 0.0014 0.0021 0.0008 0.0008 0.0025 0.0033 0.0016 0.0002 0.0003 0.0003 0.0013 0.0008 0.0002 0.0001 0.0002
Bud Neck 0.0071 0.0016 0.0167 0.0379 0.0387 0.0147 0.0149 0.0146 0.029 0.0056 0.0025 0.0225 0.0058 0.0093 0.0356 0.0032 0.0027 0.0111
Bud Periphery 0.0017 0.0099 0.0049 0.0039 0.0044 0.0024 0.002 0.0052 0.01 0.006 0.0004 0.0009 0.0006 0.0019 0.0018 0.0003 0.0003 0.0005
Bud Site 0.0132 0.0223 0.0366 0.0012 0.0096 0.0024 0.0048 0.0423 0.0147 0.0169 0.0011 0.0018 0.0088 0.0459 0.0223 0.0006 0.0014 0.0004
Cell Periphery 0.0011 0.0006 0.0006 0.0002 0.0005 0.0005 0.0008 0.0011 0.0009 0.0027 0.0001 0.0005 0.0007 0.0008 0.0005 0 0.0003 0.0002
Cytoplasm 0.0121 0.0258 0.0231 0.0131 0.0088 0.0228 0.0219 0.0304 0.019 0.0109 0.0039 0.0287 0.0254 0.0558 0.0275 0.0106 0.0285 0.0337
Cytoplasmic Foci 0.2321 0.1881 0.1516 0.1675 0.2139 0.303 0.2843 0.2292 0.2205 0.217 0.2782 0.3193 0.3331 0.318 0.3149 0.4201 0.3282 0.3943
Eisosomes 0.0012 0.0003 0.0005 0.0004 0.0002 0.0003 0.0021 0.0012 0.0016 0.0015 0.001 0.0006 0.0009 0.0007 0.0005 0.0001 0.0003 0.0003
Endoplasmic Reticulum 0.0027 0.0007 0.0013 0.0006 0.0005 0.0009 0.0021 0.0005 0.0009 0.0003 0.0006 0.0005 0.0027 0.0017 0.0007 0.0003 0.0008 0.001
Endosome 0.0772 0.0162 0.0352 0.0256 0.0264 0.0301 0.019 0.0307 0.032 0.0549 0.0183 0.0221 0.0358 0.0419 0.0308 0.0392 0.0574 0.0269
Golgi 0.0243 0.007 0.0163 0.0254 0.0442 0.0074 0.0112 0.0063 0.0107 0.0193 0.0067 0.0073 0.0098 0.0107 0.0114 0.0157 0.0138 0.0097
Lipid Particles 0.0494 0.0307 0.0159 0.0142 0.0172 0.046 0.0244 0.0234 0.0221 0.0562 0.0478 0.0445 0.0688 0.0256 0.0164 0.0449 0.102 0.0379
Mitochondria 0.0106 0.0048 0.0334 0.0052 0.0069 0.0155 0.0045 0.0128 0.016 0.026 0.0095 0.0113 0.005 0.0056 0.0136 0.0056 0.0028 0.0065
None 0.124 0.2373 0.1763 0.2629 0.044 0.2008 0.2626 0.3401 0.3361 0.1204 0.1997 0.2182 0.1968 0.2727 0.2227 0.0908 0.0894 0.1228
Nuclear Periphery 0.0036 0.0005 0.0051 0.0008 0.0034 0.0038 0.0065 0.0002 0.0006 0.0001 0.0045 0.0008 0.0036 0.0008 0.0004 0.0003 0.0002 0.0028
Nucleolus 0.004 0.0015 0.0017 0.0042 0.0016 0.0029 0.0017 0.0008 0.0015 0.0011 0.0045 0.0009 0.0039 0.0012 0.0009 0.0002 0.0003 0.0002
Nucleus 0.0035 0.0015 0.0031 0.0023 0.0025 0.002 0.0077 0.0005 0.0008 0.0006 0.0184 0.0006 0.0037 0.0011 0.0007 0.0002 0.0002 0.0006
Peroxisomes 0.313 0.3729 0.4072 0.3807 0.5371 0.316 0.2825 0.2315 0.2451 0.4249 0.3389 0.2773 0.235 0.1796 0.2625 0.3613 0.3526 0.3285
Punctate Nuclear 0.0324 0.0265 0.0131 0.0376 0.0209 0.0155 0.0048 0.0029 0.0057 0.0205 0.0359 0.0287 0.0043 0.0063 0.0126 0.0028 0.0063 0.004
Vacuole 0.0107 0.0015 0.0048 0.0013 0.001 0.0031 0.0017 0.0011 0.0016 0.0037 0.0009 0.0017 0.0038 0.003 0.0013 0.0006 0.0021 0.0006
Vacuole Periphery 0.0027 0.0003 0.0012 0.0004 0.0003 0.0008 0.0005 0.0002 0.0004 0.0008 0.0005 0.0003 0.0006 0.0005 0.0003 0.0002 0.0002 0.0003

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 14.9919 3.5738 6.6298 11.8526 19.4377 5.9934 15.3573 18.2915 10.8211 12.0088
Translational Efficiency 1.1054 4.2479 1.962 0.8311 0.5492 2.7357 1.3685 0.8213 1.6144 1.3215

Hit Data

Dataset Hit
Protein Concentration ✘
Protein Localization ✘
Gene Expression ✘
Translational Efficiency ✘
Standard name
Human Ortholog
Description Peroxisomal ubiquitin conjugating enzyme; required for peroxisomal matrix protein import and peroxisome biogenesis
Localization
Cell Percentages —
Cell Cycle Regulation No
Subcompartmental Group N/A

Pex4

Pex4


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)
Molecular Function (Gene Ontology)
Cellular Component (Gene Ontology)

Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Pex4-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available