Standard name
Human Ortholog
Description (SGD) Cysteine desulfurase involved in iron-sulfur cluster biogenesis; required for thio-modification of mitochondrial and cytoplasmic tRNAs; involved in DNA damage response by providing iron-sulfur cluster cofactors for DNA repair enzymes; essential protein located predominantly in mitochondria

Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.06 0.17 0.14 0 0 0.05 0.08 0.05 0.08
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 – – – – – –
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.1 0 0 0 0 0 0
Cytoplasm 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.05 0 0 0.05 0 0 0 0 0 0
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0.1 0 0 0 0 0 0 0 0 0 0 0.07 0 0.06 0.67 0.78 0.62 0.06 0.12 0.07 0.12 0.1 0.08
Mitochondria 0.99 0.9 0.94 0.92 0.91 0.93 0.89 0.86 0.96 0.92 0.9 0.95 0.98 0.96 0.86 0 0.21 0.1 0.84 0.78 0.76 0.6 0.76 0.72
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0.05 0 0.06 0.05 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0.16 0.05 0.1 0.1 0.14 0.24 0.23 0.29 0.2 0.2 0.21 0.18 0 0.06 0.08 0.06 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.05 0 0 0.07 0.06 0 0.05
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0 0.09 0 0 0 0 0.05 0 0 0 0 0 0 0.05 0.05 0.21 0.12 0.24 0 0 0 0 0 0
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 5 3 0 1 0 0 1 0 1 0 1 4 0 0 3 15 3 4 5 14 3 4 8
Bud 2 0 3 1 1 1 1 1 1 0 3 3 0 0 1 0 1 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 1 0 1 0 0 0 0 0 2 1 0 2 0 0 0 0 0 0 – – – – – –
Cell Periphery 2 3 2 1 0 0 0 0 0 1 1 0 0 1 1 2 1 2 0 0 0 0 0 0
Cytoplasm 0 3 1 4 2 3 2 0 2 2 3 2 0 1 5 2 2 1 0 2 0 0 0 0
Endoplasmic Reticulum 0 0 0 0 0 1 1 1 1 1 1 0 0 0 0 1 1 0 0 0 0 0 0 0
Endosome 0 0 0 1 0 0 2 0 0 0 0 0 0 1 1 1 0 0 1 1 2 0 0 2
Golgi 0 19 12 4 4 1 1 3 1 0 1 1 8 3 6 32 67 13 9 25 20 4 10 9
Mitochondria 150 178 253 122 196 239 256 337 301 284 186 295 119 94 90 2 18 2 127 171 214 23 72 80
Nucleus 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 3 2 8 0 6 6 15 17 18 14 8 13 0 1 2 0 0 0 0 0 0 0 0 0
Nucleolus 25 9 26 13 30 61 67 112 62 63 43 56 2 6 8 3 2 0 3 1 1 1 3 0
Peroxisomes 1 0 7 3 1 0 6 2 5 4 4 2 0 0 0 0 1 1 3 2 19 2 1 6
SpindlePole 0 0 1 0 0 0 1 1 1 4 0 0 0 0 1 0 0 0 0 1 0 0 0 1
Vac/Vac Membrane 3 18 2 3 8 6 15 14 4 5 1 1 5 5 5 10 10 5 0 5 2 1 1 1
Unique Cell Count 152 198 268 132 215 256 287 390 315 308 207 312 122 98 105 48 86 21 151 220 280 39 96 112
Labelled Cell Count 187 237 320 152 249 318 368 490 398 380 251 376 138 112 120 56 118 27 151 220 280 39 96 112


Mitochondria

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 24.3 29.7 27.2 26.9 29.7 29.4 27.1 26.7 25.2 23.0 24.3 23.8 24.7 24.7 24.2 27.9 33.0 34.3 19.9 24.0 25.7
Std Deviation (1e-4) 5.8 7.1 7.1 7.3 7.8 8.4 8.3 8.5 7.8 7.7 8.2 7.9 5.0 5.5 6.5 9.0 10.7 10.8 4.9 6.3 8.4
Intensity Change (Log2) – – – -0.01 0.13 0.11 -0.01 -0.03 -0.11 -0.24 -0.16 -0.2 -0.14 -0.14 -0.17 0.04 0.28 0.34 -0.45 -0.18 -0.08


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi -0.7 -1.6 -3.0 -3.2 -3.1 -3.4 -3.8 -2.6 -3.4 0.9 0 0.5 11.5 14.2 0
Mitochondria -0.8 -1.4 -0.5 -2.2 -3.3 0.6 -1.0 -1.9 0.1 1.4 0.6 -2.8 -14.6 -14.0 -11.6
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 -0.1 -0.5 1.3 0.9 1.6 1.0 0.5 0.8 0 0 0 0 0 0
Nucleolus 0 1.5 4.3 4.3 5.9 3.4 3.6 3.4 2.8 -2.9 -1.1 -0.6 0 -2.2 0
Peroxisomes 0 0 0 -0.4 0 -0.9 -1.1 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vacuole 0 0 0 3.1 2.3 0 0 0 0 0 0 0 0 0 0

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration – – – – – – – – – – – – – – – – – –
Actin – – – – – – – – – – – – – – – – – –
Bud – – – – – – – – – – – – – – – – – –
Bud Neck – – – – – – – – – – – – – – – – – –
Bud Periphery – – – – – – – – – – – – – – – – – –
Bud Site – – – – – – – – – – – – – – – – – –
Cell Periphery – – – – – – – – – – – – – – – – – –
Cytoplasm – – – – – – – – – – – – – – – – – –
Cytoplasmic Foci – – – – – – – – – – – – – – – – – –
Eisosomes – – – – – – – – – – – – – – – – – –
Endoplasmic Reticulum – – – – – – – – – – – – – – – – – –
Endosome – – – – – – – – – – – – – – – – – –
Golgi – – – – – – – – – – – – – – – – – –
Lipid Particles – – – – – – – – – – – – – – – – – –
Mitochondria – – – – – – – – – – – – – – – – – –
None – – – – – – – – – – – – – – – – – –
Nuclear Periphery – – – – – – – – – – – – – – – – – –
Nucleolus – – – – – – – – – – – – – – – – – –
Nucleus – – – – – – – – – – – – – – – – – –
Peroxisomes – – – – – – – – – – – – – – – – – –
Punctate Nuclear – – – – – – – – – – – – – – – – – –
Vacuole – – – – – – – – – – – – – – – – – –
Vacuole Periphery – – – – – – – – – – – – – – – – – –

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 75.3328 72.6248 59.2798 62.6039 69.9027 65.6952 73.9315 69.3852 75.1416 82.2217
Translational Efficiency 1.2937 1.1715 1.2685 1.1657 0.9567 1.4923 1.2774 1.2169 1.135 1.1193

Hit Data

Dataset Hit
Protein Concentration –
Protein Localization –
Gene Expression ✘
Translational Efficiency ✘


Micrographs

Cell Count

Number of cells analysed for each strain. R1, R2: biological replicates; R1 & R2: both replicates combined.

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
12 1134 1500 728 1799 1459 1512 348 1811 2593 3012 1076

Protein Abundance

Mean and standard deviation of cell GFP intensity, and intensity change (log2) of each mutant relative to wild type.

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Mean 286.36 2106.90 1763.46 2356.33 1838.92 2158.14 1908.20 2499.05 1828.63 2135.73 1836.12 2402.49
Standard Deviation 4.34 592.27 583.45 601.22 461.54 552.10 459.72 692.51 476.94 570.59 529.96 635.70
Intensity Change Log 2 — 2.879220 2.622507 3.040640 — 0.230930 0.053354 0.442521 — 1.004906 0.788780 1.191931

Localization Score (DeepLoc)

Localization score for each compartment. Values highlighted in green denote significant localization scores (marked * in the plot).

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Actin 0.000023 0.007171 0.004546 0.011621 0.001677 0.007326 0.006977 0.008577 0.001666 0.007259 0.005767 0.010637
Bud Neck 0.000012 0.002507 0.015192 0.002943 0.000510 0.001899 0.005573 0.005559 0.000507 0.002165 0.010364 0.003789
Bud Site 0.000028 0.002685 0.068964 0.002962 0.000199 0.000988 0.010326 0.006398 0.000198 0.001730 0.039528 0.004073
Cell Periphery 0.000078 0.000138 0.008523 0.000307 0.000044 0.000087 0.000493 0.000417 0.000044 0.000109 0.004492 0.000343
Cytoplasm 0.000030 0.000429 0.008550 0.000459 0.000138 0.000181 0.000677 0.000627 0.000137 0.000290 0.004598 0.000513
Cytoplasmic Foci 0.000010 0.025236 0.029011 0.017381 0.013456 0.021177 0.023263 0.016114 0.013367 0.022952 0.026126 0.016971
Eisosomes 0.000039 0.003859 0.000890 0.002290 0.002093 0.001564 0.000852 0.001193 0.002080 0.002567 0.000871 0.001935
Endoplasmic Reticulum 0.000001 0.000121 0.003111 0.000298 0.000049 0.000132 0.000339 0.000263 0.000049 0.000127 0.001720 0.000287
Endosome 0.000001 0.001411 0.018781 0.002459 0.000461 0.001246 0.005198 0.003575 0.000458 0.001318 0.011963 0.002820
Golgi 0.000005 0.014439 0.019458 0.034752 0.007602 0.022993 0.022100 0.026966 0.007551 0.019252 0.020784 0.032234
Lipid Particles 0.000017 0.007367 0.013114 0.003005 0.004705 0.012692 0.013099 0.003618 0.004674 0.010363 0.013106 0.003203
Mitochondria 0.000010 0.899086* 0.701543* 0.880735* 0.944592* 0.888554* 0.854163* 0.857872* 0.938333* 0.893160* 0.778157* 0.873340*
Mitotic Spindle 0.000203 0.000699 0.006616 0.002005 0.000123 0.002059 0.004938 0.003456 0.000124 0.001464 0.005774 0.002474
None 0.999428* 0.003113 0.005183 0.003700 0.003884 0.004751 0.003313 0.003253 0.010481 0.004035 0.004244 0.003555
Nuclear Periphery 0.000000 0.000237 0.002285 0.000470 0.000189 0.001178 0.001816 0.000992 0.000188 0.000767 0.002049 0.000639
Nuclear Periphery Foci 0.000017 0.000193 0.001981 0.000236 0.000144 0.000476 0.000863 0.000615 0.000143 0.000353 0.001420 0.000359
Nucleolus 0.000028 0.001876 0.004895 0.001069 0.000598 0.001335 0.002149 0.001931 0.000594 0.001572 0.003517 0.001348
Nucleus 0.000010 0.000319 0.002615 0.000168 0.000033 0.000084 0.000312 0.000350 0.000033 0.000187 0.001459 0.000227
Peroxisomes 0.000059 0.021139 0.009627 0.009535 0.012860 0.006380 0.009335 0.008974 0.012775 0.012835 0.009480 0.009353
Vacuole 0.000001 0.004028 0.039218 0.009301 0.002545 0.009223 0.013625 0.023771 0.002528 0.006951 0.026371 0.013981
Vacuole Periphery 0.000000 0.003945 0.035895 0.014304 0.004097 0.015675 0.020591 0.025478 0.004070 0.010545 0.028212 0.017918

Localization Changes (T-score)

Change in localization of each mutant relative to its control (e.g. UBP2_WT: ubp2Δ vs wild type). Values highlighted in yellow (increase) or blue (decrease) denote significant changes (marked * in the plot).

R1 R2 R1 & R2
UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14
Actin N/A N/A N/A -1.91 -3.28 -4.74 -5.14 -4.39 -0.66 -0.88 -6.33 -5.95 -5.90 -2.02 -3.06
Bud Neck N/A N/A N/A -0.78 8.64 -5.09 -8.65 -4.95 -3.53 -0.07 -7.24 -13.44 -6.97 -3.28 7.52
Bud Site N/A N/A N/A -0.29 13.94 -3.67 -6.29 -3.00 -2.61 1.40 -4.20 -15.63 -4.58 -2.60 13.27
Cell Periphery N/A N/A N/A -2.84 7.59 -3.10 -5.77 -4.17 -3.68 0.62 -4.12 -8.17 -6.34 -4.86 7.59
Cytoplasm N/A N/A N/A -0.29 7.24 -1.30 -4.79 -2.78 -2.55 0.21 -2.48 -7.98 -4.18 -2.27 7.18
Cytoplasmic Foci N/A N/A N/A 2.25 3.47 -3.83 -4.70 -0.91 1.29 1.90 -5.32 -7.00 -1.72 2.35 3.71
Eisosomes N/A N/A N/A 2.39 -2.46 2.65 6.82 4.07 2.06 -2.12 -2.11 7.00 0.35 1.52 -2.74
Endoplasmic Reticulum N/A N/A N/A -2.83 5.43 -4.85 -5.60 -4.01 -2.39 1.03 -5.76 -6.46 -5.35 -3.51 5.46
Endosome N/A N/A N/A -1.65 10.66 -4.74 -9.27 -3.72 -2.77 1.65 -4.96 -15.02 -4.99 -3.07 10.21
Golgi N/A N/A N/A -4.67 -3.57 -7.77 -7.22 -4.62 -0.89 -1.08 -7.63 -8.91 -7.94 -3.99 -3.54
Lipid Particles N/A N/A N/A 3.21 5.91 -5.39 -5.51 1.06 5.61 5.73 -5.33 -7.16 1.82 6.58 8.28
Mitochondria N/A N/A N/A 1.83 -14.04 8.87 12.61 6.49 2.26 -0.19 8.20 22.86 8.26 2.55 -10.26
Mitotic Spindle N/A N/A N/A -2.18 3.52 -3.07 -5.31 -2.15 -0.88 0.76 -3.70 -7.60 -3.67 -1.41 3.33
None N/A N/A N/A -1.68 2.67 -2.84 2.36 2.01 4.24 0.21 3.37 3.24 3.61 1.79 2.09
Nuclear Periphery N/A N/A N/A -2.73 4.80 -4.50 -5.76 -2.75 0.48 2.00 -4.61 -7.99 -4.08 0.75 5.48
Nuclear Periphery Foci N/A N/A N/A -0.79 6.20 -4.78 -4.39 -2.54 -0.75 0.96 -4.65 -7.88 -2.98 -0.14 6.05
Nucleolus N/A N/A N/A 1.61 5.11 -2.09 -2.65 -2.28 -1.00 0.18 -3.25 -6.12 -2.51 0.49 4.10
Nucleus N/A N/A N/A 0.66 5.51 -3.49 -3.69 -2.35 -1.99 -0.36 -2.03 -6.51 -2.92 -0.61 5.22
Peroxisomes N/A N/A N/A 4.12 0.06 3.58 1.89 1.55 -1.20 0.15 -0.03 1.96 1.71 2.01 0.09
Vacuole N/A N/A N/A -2.74 10.22 -6.15 -10.21 -4.48 -3.02 -2.11 -6.22 -18.54 -5.68 -3.40 5.17
Vacuole Periphery N/A N/A N/A -5.11 7.62 -8.48 -10.38 -6.15 -2.67 -1.30 -6.93 -17.31 -7.87 -3.94 4.81
Standard name
Human Ortholog
Description (SGD) Cysteine desulfurase involved in iron-sulfur cluster biogenesis; required for thio-modification of mitochondrial and cytoplasmic tRNAs; involved in DNA damage response by providing iron-sulfur cluster cofactors for DNA repair enzymes; essential protein located predominantly in mitochondria
Localization
Cell Percentages mitochondrion (100%)
Cell Cycle Regulation No
Subcompartmental Group mito-3

Nfs1

Nfs1


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)

Molecular Function (Gene Ontology)

Cellular Component (Gene Ontology)