Standard name | |
---|---|
Human Ortholog | |
Description | Microtubule-associated protein; component of the interface between microtubules and kinetochore, involved in sister chromatid separation; essential in polyploid cells but not in haploid or diploid cells; ortholog of mammalian CLIP-170 |
ensLOC | DeepLoc | |||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 1 | 0 | 1 | 0 | 1 | 1 | 7 | 3 | 0 | 1 | 0 | 0 | 3 | 0 | 3 | 0 | 1 | 0 | 1 | 0 | 2 | 4 | 11 | 10 |
Bud | 1 | 1 | 4 | 1 | 9 | 10 | 45 | 36 | 40 | 35 | 22 | 31 | 1 | 0 | 1 | 1 | 2 | 1 | 2 | 1 | 1 | 9 | 16 | 11 |
Bud Neck | 0 | 0 | 3 | 3 | 3 | 4 | 6 | 9 | 9 | 4 | 3 | 4 | 2 | 1 | 1 | 2 | 1 | 0 | 1 | 1 | 1 | 10 | 8 | 7 |
Bud Site | 11 | 0 | 12 | 14 | 14 | 21 | 23 | 21 | 31 | 52 | 33 | 41 | 3 | 3 | 3 | 4 | 3 | 2 | – | – | – | – | – | – |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 2 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 5 | 0 | 4 | 6 | 15 | 12 | 19 | 11 | 8 | 13 | 6 | 5 | 11 | 22 | 27 | 11 | 26 | 20 | 0 | 0 | 0 | 1 | 2 | 2 |
Endoplasmic Reticulum | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 8 | 7 | 4 | 0 | 0 | 1 | 0 | 0 | 0 |
Endosome | 23 | 9 | 108 | 46 | 51 | 34 | 16 | 65 | 21 | 13 | 9 | 19 | 64 | 111 | 107 | 111 | 96 | 71 | 45 | 23 | 96 | 32 | 52 | 61 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 1 | 2 | 3 | 0 | 4 | 1 | 4 | 1 |
Mitochondria | 89 | 15 | 68 | 111 | 119 | 214 | 291 | 243 | 353 | 427 | 372 | 419 | 1 | 0 | 4 | 48 | 12 | 10 | 8 | 5 | 18 | 14 | 21 | 23 |
Nucleus | 4 | 2 | 3 | 3 | 11 | 13 | 9 | 13 | 13 | 14 | 31 | 17 | 5 | 4 | 6 | 6 | 7 | 6 | 0 | 0 | 0 | 2 | 1 | 3 |
Nuclear Periphery | 2 | 0 | 0 | 1 | 2 | 4 | 9 | 16 | 16 | 11 | 15 | 17 | 0 | 0 | 1 | 4 | 3 | 3 | 0 | 0 | 0 | 1 | 1 | 0 |
Nucleolus | 56 | 17 | 65 | 67 | 94 | 98 | 138 | 145 | 169 | 179 | 159 | 186 | 57 | 79 | 71 | 154 | 112 | 87 | 5 | 3 | 6 | 9 | 10 | 6 |
Peroxisomes | 16 | 0 | 91 | 49 | 52 | 53 | 80 | 126 | 31 | 46 | 21 | 68 | 23 | 38 | 66 | 51 | 48 | 30 | 30 | 6 | 71 | 37 | 101 | 103 |
SpindlePole | 55 | 9 | 168 | 86 | 132 | 94 | 133 | 228 | 169 | 154 | 94 | 134 | 157 | 231 | 192 | 178 | 135 | 103 | 67 | 24 | 130 | 60 | 125 | 183 |
Vac/Vac Membrane | 2 | 3 | 9 | 4 | 6 | 8 | 2 | 4 | 9 | 6 | 8 | 7 | 7 | 5 | 13 | 16 | 12 | 16 | 0 | 1 | 0 | 2 | 5 | 3 |
Unique Cell Count | 172 | 40 | 329 | 248 | 337 | 384 | 529 | 623 | 638 | 691 | 551 | 684 | 226 | 338 | 332 | 354 | 290 | 216 | 187 | 76 | 365 | 202 | 378 | 442 |
Labelled Cell Count | 266 | 56 | 536 | 391 | 509 | 567 | 778 | 920 | 869 | 956 | 773 | 950 | 334 | 495 | 497 | 596 | 466 | 355 | 187 | 76 | 365 | 202 | 378 | 442 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 4.9 | 6.3 | 5.4 | 5.0 | 5.3 | 4.5 | 4.5 | 4.6 | 4.3 | 4.3 | 4.0 | 4.2 | 7.3 | 7.2 | 7.0 | 8.3 | 8.3 | 8.7 | 6.9 | 6.9 | 7.0 |
Std Deviation (1e-4) | 0.7 | 1.1 | 0.8 | 1.0 | 1.5 | 0.9 | 1.4 | 1.0 | 0.9 | 1.1 | 0.9 | 1.0 | 1.2 | 1.3 | 1.2 | 1.7 | 1.7 | 1.7 | 1.2 | 1.2 | 1.1 |
Intensity Change (Log2) | – | – | – | -0.11 | -0.03 | -0.25 | -0.25 | -0.24 | -0.32 | -0.34 | -0.43 | -0.35 | 0.44 | 0.42 | 0.36 | 0.61 | 0.62 | 0.69 | 0.36 | 0.34 | 0.37 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 1.4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 1.1 | 0.3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | -1.7 | -2.4 | -2.4 | -2.2 | -2.1 | -2.0 |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 0 | 2.5 | 1.7 | 2.1 | 0.6 | 0 | 0.8 | 0 | 0 | 2.6 | 3.5 | 4.2 | 1.7 | 4.5 | 4.5 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Endosome | -3.8 | -5.4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | -1.1 | 0 | -0.2 | -0.4 | 0.1 | 0 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 6.2 | 4.2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | -7.1 | -8.8 | -8.0 | -2.5 | -6.1 | -5.2 |
Nucleus | 0 | 2.1 | 2.2 | 0 | 1.3 | 1.3 | 1.3 | 3.5 | 1.7 | 0 | 0 | 0 | 0 | 0 | 0 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 2.1 | 2.5 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1.5 | 1.1 | 0.5 | 6.6 | 5.2 | 5.2 |
Peroxisomes | -2.2 | -3.8 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | -5.0 | -5.4 | -2.4 | -4.3 | -3.3 | -3.8 |
SpindlePole | -3.9 | -3.1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 4.3 | 4.6 | 1.7 | -0.2 | -1.1 | -0.8 |
Vacuole | -0.9 | -0.8 | -0.6 | 0 | 0 | -1.4 | 0 | -1.3 | -2.0 | 0.3 | -1.1 | 0.8 | 1.2 | 1.0 | 2.5 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 1.425 | 1.9761 | 1.9181 | 1.2859 | 1.2153 | 1.6268 | 1.5083 | 1.8212 | 1.641 | 1.594 | 1.2783 | 1.4509 | 0.3122 | 0.8186 | 0.5227 | 0.2726 | 0.5981 | 0.2134 |
Actin | 0.01 | 0.0043 | 0.0095 | 0.0057 | 0.0016 | 0.0092 | 0.034 | 0.0063 | 0.005 | 0.0027 | 0.0449 | 0.0097 | 0.0159 | 0.0021 | 0.0019 | 0.0022 | 0.0064 | 0.0062 |
Bud | 0.0002 | 0.0025 | 0.0005 | 0.0006 | 0.0001 | 0.0004 | 0.0007 | 0.0007 | 0.0002 | 0.0002 | 0.0012 | 0.0003 | 0.0003 | 0.001 | 0.0001 | 0.0004 | 0.0002 | 0.0005 |
Bud Neck | 0.0164 | 0.007 | 0.0179 | 0.0572 | 0.0001 | 0.006 | 0.0018 | 0.0032 | 0.0014 | 0.0088 | 0.0089 | 0.0052 | 0.0009 | 0.013 | 0.0011 | 0.0215 | 0.0002 | 0.0038 |
Bud Periphery | 0.0002 | 0.0028 | 0.0007 | 0.0009 | 0.0001 | 0.001 | 0.0013 | 0.0011 | 0.0004 | 0.0006 | 0.0017 | 0.0007 | 0.0008 | 0.0016 | 0.0002 | 0.0011 | 0.0004 | 0.0008 |
Bud Site | 0.0032 | 0.0468 | 0.0058 | 0.0046 | 0.0002 | 0.0019 | 0.0036 | 0.0218 | 0.004 | 0.0076 | 0.0064 | 0.0012 | 0.0017 | 0.0146 | 0.002 | 0.0034 | 0.0006 | 0.0027 |
Cell Periphery | 0.0001 | 0.0004 | 0.0002 | 0.0002 | 0 | 0.0001 | 0.0002 | 0.0003 | 0.0001 | 0.0002 | 0.0002 | 0.0001 | 0.0002 | 0.0003 | 0 | 0.0004 | 0 | 0.0001 |
Cytoplasm | 0.0065 | 0.0291 | 0.0003 | 0.0026 | 0.0002 | 0.012 | 0.0036 | 0.0027 | 0.0005 | 0.0004 | 0.0051 | 0.0016 | 0.0022 | 0.0079 | 0.0002 | 0.0002 | 0.0003 | 0.0041 |
Cytoplasmic Foci | 0.2054 | 0.08 | 0.0511 | 0.1608 | 0.1221 | 0.1285 | 0.1409 | 0.1026 | 0.0514 | 0.0833 | 0.0752 | 0.0851 | 0.1565 | 0.087 | 0.0498 | 0.0844 | 0.071 | 0.0847 |
Eisosomes | 0.0001 | 0.0001 | 0.0001 | 0.0001 | 0 | 0.0001 | 0.0003 | 0.0001 | 0.0002 | 0.0001 | 0.0002 | 0.0001 | 0.0001 | 0 | 0 | 0.0001 | 0.0001 | 0.0001 |
Endoplasmic Reticulum | 0.0011 | 0.0029 | 0.0001 | 0.0004 | 0.0001 | 0.0006 | 0.0017 | 0.0005 | 0.0002 | 0.0005 | 0.0014 | 0.0007 | 0.0013 | 0.0017 | 0 | 0.0001 | 0.0002 | 0.0011 |
Endosome | 0.0221 | 0.0208 | 0.003 | 0.014 | 0.007 | 0.0209 | 0.0294 | 0.0138 | 0.0059 | 0.0076 | 0.0501 | 0.0197 | 0.0189 | 0.0243 | 0.0027 | 0.0056 | 0.0155 | 0.0193 |
Golgi | 0.0131 | 0.0082 | 0.0044 | 0.0138 | 0.0164 | 0.0137 | 0.022 | 0.011 | 0.0052 | 0.0136 | 0.0306 | 0.0189 | 0.0129 | 0.009 | 0.0062 | 0.0102 | 0.0222 | 0.0174 |
Lipid Particles | 0.2851 | 0.1024 | 0.0722 | 0.1511 | 0.4361 | 0.2149 | 0.2061 | 0.1033 | 0.0661 | 0.1961 | 0.2646 | 0.2217 | 0.2298 | 0.0909 | 0.0781 | 0.1889 | 0.4225 | 0.202 |
Mitochondria | 0.0079 | 0.0026 | 0.0009 | 0.0035 | 0.0115 | 0.0051 | 0.0115 | 0.0084 | 0.003 | 0.0149 | 0.023 | 0.0105 | 0.0031 | 0.002 | 0.0005 | 0.0131 | 0.0259 | 0.0114 |
None | 0.0056 | 0.0115 | 0.0006 | 0.0017 | 0.0003 | 0.0014 | 0.0027 | 0.0007 | 0.0005 | 0.0004 | 0.001 | 0.0006 | 0.0039 | 0.0014 | 0.0002 | 0.0005 | 0.0007 | 0.0035 |
Nuclear Periphery | 0.006 | 0.0145 | 0.0018 | 0.0036 | 0.0035 | 0.0088 | 0.0145 | 0.0053 | 0.0026 | 0.0054 | 0.004 | 0.0202 | 0.0105 | 0.0264 | 0.0015 | 0.0036 | 0.0046 | 0.0156 |
Nucleolus | 0.0113 | 0.0977 | 0.1196 | 0.0588 | 0.0026 | 0.0187 | 0.0252 | 0.0637 | 0.0932 | 0.0479 | 0.0094 | 0.0296 | 0.0257 | 0.1469 | 0.0724 | 0.1171 | 0.0023 | 0.0455 |
Nucleus | 0.0057 | 0.0906 | 0.0357 | 0.0792 | 0.0004 | 0.0177 | 0.023 | 0.0277 | 0.0089 | 0.0045 | 0.0027 | 0.0101 | 0.0285 | 0.0782 | 0.0142 | 0.0141 | 0.0009 | 0.0198 |
Peroxisomes | 0.0926 | 0.0676 | 0.0127 | 0.1697 | 0.2876 | 0.1333 | 0.1211 | 0.1119 | 0.019 | 0.1063 | 0.3 | 0.1417 | 0.076 | 0.0401 | 0.0306 | 0.0955 | 0.3701 | 0.1357 |
Punctate Nuclear | 0.3062 | 0.4033 | 0.6618 | 0.2691 | 0.1093 | 0.4017 | 0.3539 | 0.5125 | 0.7316 | 0.4978 | 0.1651 | 0.4202 | 0.4075 | 0.4459 | 0.7376 | 0.4359 | 0.0543 | 0.4233 |
Vacuole | 0.0008 | 0.004 | 0.0008 | 0.002 | 0.0003 | 0.0032 | 0.0013 | 0.0019 | 0.0004 | 0.0006 | 0.0028 | 0.0014 | 0.0025 | 0.0041 | 0.0002 | 0.0014 | 0.0006 | 0.0015 |
Vacuole Periphery | 0.0005 | 0.0008 | 0.0002 | 0.0004 | 0.0005 | 0.0007 | 0.0011 | 0.0006 | 0.0002 | 0.0005 | 0.0013 | 0.0008 | 0.0008 | 0.0015 | 0.0001 | 0.0004 | 0.0009 | 0.0009 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 12.9273 | 11.929 | 12.7245 | 13.0002 | 15.6794 | 14.1704 | 13.946 | 15.518 | 13.0136 | 15.5192 |
Translational Efficiency | 2.0096 | 1.4185 | 1.0932 | 1.0947 | 1.0118 | 1.5708 | 0.9417 | 1.146 | 1.1167 | 1.0206 |
Dataset | Hit |
---|---|
Protein Concentration | ✘ |
Protein Localization | ✔ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
---|
Gene | Images |
---|
Gene | Images |
---|