Standard name | |
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Human Ortholog | |
Description | Mitochondrial protein that interacts with mitochondrial RNA polymerase; interacts with an N-terminal region of mitochondrial RNA polymerase (Rpo41p) and couples RNA processing and translation to transcription |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 1 | 2 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 8 | 5 | 10 | 4 | 2 | 8 | 3 | 3 | 6 | 2 | 8 | 13 |
Bud | 5 | 4 | 21 | 24 | 16 | 23 | 34 | 16 | 28 | 29 | 30 | 30 | 4 | 4 | 6 | 17 | 10 | 14 | 0 | 0 | 1 | 0 | 1 | 2 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 3 | 3 |
Bud Site | 1 | 1 | 1 | 1 | 3 | 10 | 16 | 10 | 12 | 12 | 15 | 10 | 0 | 0 | 0 | 2 | 1 | 1 | – | – | – | – | – | – |
Cell Periphery | 7 | 14 | 25 | 19 | 7 | 5 | 3 | 6 | 3 | 7 | 9 | 9 | 20 | 19 | 14 | 34 | 26 | 18 | 0 | 0 | 0 | 0 | 0 | 2 |
Cytoplasm | 1 | 2 | 6 | 10 | 23 | 19 | 17 | 27 | 8 | 8 | 6 | 7 | 7 | 20 | 22 | 15 | 26 | 34 | 0 | 0 | 0 | 1 | 1 | 1 |
Endoplasmic Reticulum | 4 | 4 | 0 | 5 | 5 | 3 | 0 | 1 | 0 | 3 | 0 | 3 | 7 | 8 | 17 | 14 | 15 | 18 | 0 | 1 | 1 | 0 | 1 | 0 |
Endosome | 1 | 7 | 20 | 11 | 24 | 6 | 4 | 48 | 4 | 2 | 0 | 3 | 20 | 76 | 49 | 29 | 48 | 56 | 15 | 20 | 35 | 15 | 25 | 23 |
Golgi | 1 | 8 | 4 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 55 | 53 | 66 | 53 | 54 | 38 | 12 | 15 | 22 | 9 | 30 | 47 |
Mitochondria | 359 | 229 | 561 | 519 | 634 | 584 | 853 | 798 | 873 | 1089 | 714 | 986 | 198 | 202 | 170 | 38 | 29 | 34 | 292 | 203 | 471 | 184 | 324 | 351 |
Nucleus | 2 | 1 | 2 | 0 | 4 | 18 | 25 | 19 | 13 | 20 | 2 | 7 | 2 | 4 | 0 | 6 | 8 | 12 | 0 | 0 | 0 | 1 | 2 | 1 |
Nuclear Periphery | 22 | 9 | 21 | 17 | 18 | 49 | 65 | 87 | 86 | 48 | 46 | 78 | 2 | 2 | 2 | 9 | 5 | 6 | 3 | 2 | 3 | 2 | 1 | 3 |
Nucleolus | 15 | 4 | 11 | 5 | 30 | 42 | 109 | 80 | 52 | 99 | 39 | 44 | 0 | 1 | 0 | 3 | 1 | 6 | 1 | 0 | 1 | 1 | 0 | 3 |
Peroxisomes | 5 | 4 | 68 | 27 | 25 | 8 | 6 | 30 | 17 | 8 | 8 | 13 | 21 | 88 | 26 | 44 | 64 | 48 | 26 | 9 | 81 | 12 | 13 | 22 |
SpindlePole | 3 | 3 | 17 | 17 | 12 | 14 | 28 | 45 | 30 | 18 | 14 | 12 | 2 | 26 | 20 | 32 | 37 | 42 | 0 | 0 | 1 | 0 | 1 | 2 |
Vac/Vac Membrane | 30 | 34 | 23 | 10 | 41 | 21 | 14 | 56 | 36 | 35 | 34 | 38 | 22 | 51 | 49 | 56 | 57 | 59 | 3 | 11 | 1 | 15 | 22 | 22 |
Unique Cell Count | 365 | 256 | 614 | 543 | 707 | 639 | 936 | 976 | 930 | 1155 | 738 | 1026 | 260 | 370 | 355 | 286 | 299 | 312 | 361 | 272 | 633 | 251 | 443 | 507 |
Labelled Cell Count | 456 | 325 | 782 | 665 | 843 | 803 | 1176 | 1224 | 1162 | 1378 | 917 | 1240 | 368 | 559 | 451 | 356 | 383 | 394 | 361 | 272 | 633 | 251 | 443 | 507 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 5.2 | 6.1 | 5.4 | 5.0 | 5.2 | 4.6 | 4.4 | 4.8 | 4.4 | 4.3 | 4.1 | 4.3 | 6.8 | 6.8 | 6.5 | 6.9 | 7.1 | 6.3 | 7.3 | 7.4 | 7.6 |
Std Deviation (1e-4) | 0.8 | 1.4 | 0.9 | 1.3 | 1.4 | 1.6 | 1.2 | 1.2 | 1.1 | 1.1 | 1.0 | 1.1 | 1.0 | 1.2 | 1.1 | 1.2 | 1.4 | 1.3 | 1.1 | 1.2 | 1.4 |
Intensity Change (Log2) | – | – | – | -0.12 | -0.05 | -0.22 | -0.28 | -0.16 | -0.29 | -0.31 | -0.38 | -0.31 | 0.35 | 0.34 | 0.27 | 0.36 | 0.41 | 0.22 | 0.44 | 0.45 | 0.5 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0.9 | -1.3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | -1.5 | -2.3 | -1.6 | 1.8 | -0.1 | 0.8 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | -0.5 | -3.6 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2.2 | 0.8 | -0.1 | 4.4 | 2.9 | 1.2 |
Cytoplasm | 1.3 | 2.8 | 2.5 | 1.3 | 2.4 | -0.2 | 0 | -0.3 | 0 | 0 | 4.2 | 4.7 | 3.9 | 6.0 | 7.0 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 5.5 | 0 | 0 | 6.0 |
Endosome | -1.3 | 0.1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2.9 | 8.9 | 6.2 | 4.2 | 6.9 | 7.7 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 11.0 | 8.9 | 10.4 | 10.3 | 10.1 | 8.0 |
Mitochondria | 2.9 | -1.0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | -6.1 | -13.4 | -15.1 | -23.1 | -24.2 | -24.2 |
Nucleus | 0 | 0 | 3.5 | 3.5 | 2.8 | 2.1 | 2.5 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nuclear Periphery | -0.3 | -0.9 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | -2.2 | -2.9 | -2.8 | -0.2 | -1.5 | -1.3 |
Nucleolus | -1.3 | 2.6 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.1 |
Peroxisomes | -3.8 | -5.3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | -1.3 | 5.3 | -1.9 | 1.8 | 4.2 | 1.9 |
SpindlePole | 0.4 | -1.3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | -1.9 | 3.2 | 2.2 | 5.2 | 5.8 | 6.3 |
Vacuole | -1.9 | 1.7 | -0.4 | -2.8 | 1.8 | 0.1 | -0.8 | 0.8 | 0 | 2.9 | 5.8 | 5.8 | 7.8 | 7.7 | 7.7 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Actin | – | – | – | – | – | – | 0.0367 | 0.0134 | 0.0237 | 0.0022 | 0.0141 | 0.0037 | 0.013 | 0.0199 | 0.0197 | 0.0048 | 0.007 | 0.0133 |
Bud | – | – | – | – | – | – | 0.0005 | 0.0017 | 0.0009 | 0.0001 | 0.0012 | 0.0002 | 0.0004 | 0.0012 | 0.0027 | 0.0032 | 0.0003 | 0.0009 |
Bud Neck | – | – | – | – | – | – | 0.0013 | 0.0006 | 0.0006 | 0.0001 | 0.0006 | 0.0003 | 0.0003 | 0.0014 | 0.0016 | 0.0006 | 0.0004 | 0.005 |
Bud Periphery | – | – | – | – | – | – | 0.0008 | 0.0019 | 0.0012 | 0.0003 | 0.0019 | 0.0006 | 0.0008 | 0.0014 | 0.0038 | 0.0177 | 0.0007 | 0.0019 |
Bud Site | – | – | – | – | – | – | 0.0043 | 0.0078 | 0.0029 | 0.0001 | 0.0022 | 0.0003 | 0.0009 | 0.027 | 0.0168 | 0.0024 | 0.0005 | 0.0019 |
Cell Periphery | – | – | – | – | – | – | 0.0004 | 0.0004 | 0.0003 | 0.0001 | 0.0003 | 0.0002 | 0.0003 | 0.0006 | 0.0013 | 0.0036 | 0.0002 | 0.0002 |
Cytoplasm | – | – | – | – | – | – | 0.0039 | 0.0036 | 0.011 | 0.0002 | 0.0011 | 0.0002 | 0.0019 | 0.0032 | 0.005 | 0.0017 | 0.0002 | 0.0085 |
Cytoplasmic Foci | – | – | – | – | – | – | 0.026 | 0.0242 | 0.0191 | 0.0063 | 0.0102 | 0.0049 | 0.0204 | 0.0327 | 0.0281 | 0.0087 | 0.0126 | 0.0126 |
Eisosomes | – | – | – | – | – | – | 0.0004 | 0.0007 | 0.0005 | 0.0001 | 0.0003 | 0.0002 | 0.0009 | 0.0019 | 0.0015 | 0.0003 | 0.0004 | 0.0002 |
Endoplasmic Reticulum | – | – | – | – | – | – | 0.0007 | 0.0026 | 0.0004 | 0.0003 | 0.0023 | 0.0004 | 0.0013 | 0.0011 | 0.0017 | 0.0004 | 0.0002 | 0.0004 |
Endosome | – | – | – | – | – | – | 0.0668 | 0.0722 | 0.0447 | 0.0822 | 0.0754 | 0.0286 | 0.0773 | 0.0872 | 0.0644 | 0.0311 | 0.0218 | 0.0261 |
Golgi | – | – | – | – | – | – | 0.1046 | 0.0863 | 0.0614 | 0.0511 | 0.0592 | 0.0661 | 0.0508 | 0.0687 | 0.0386 | 0.0233 | 0.0437 | 0.0515 |
Lipid Particles | – | – | – | – | – | – | 0.0607 | 0.0184 | 0.012 | 0.0034 | 0.0195 | 0.0193 | 0.077 | 0.033 | 0.0261 | 0.005 | 0.0295 | 0.0233 |
Mitochondria | – | – | – | – | – | – | 0.6269 | 0.7209 | 0.7868 | 0.8354 | 0.7734 | 0.829 | 0.6228 | 0.5832 | 0.6872 | 0.7402 | 0.8307 | 0.7807 |
None | – | – | – | – | – | – | 0.014 | 0.0019 | 0.0048 | 0 | 0.0006 | 0.0001 | 0.0469 | 0.0672 | 0.0306 | 0.1024 | 0.0015 | 0.0267 |
Nuclear Periphery | – | – | – | – | – | – | 0.0008 | 0.0018 | 0.0003 | 0.0001 | 0.0064 | 0.0002 | 0.0074 | 0.001 | 0.0016 | 0.0003 | 0.0002 | 0.0011 |
Nucleolus | – | – | – | – | – | – | 0.0059 | 0.0004 | 0.0003 | 0 | 0.0007 | 0.0002 | 0.0012 | 0.0026 | 0.0029 | 0.0014 | 0.0004 | 0.002 |
Nucleus | – | – | – | – | – | – | 0.0007 | 0.0005 | 0.0002 | 0 | 0.0026 | 0.0002 | 0.002 | 0.0019 | 0.0017 | 0.001 | 0.0003 | 0.002 |
Peroxisomes | – | – | – | – | – | – | 0.0292 | 0.0301 | 0.0164 | 0.0136 | 0.0085 | 0.0217 | 0.0587 | 0.0475 | 0.0423 | 0.0287 | 0.045 | 0.0318 |
Punctate Nuclear | – | – | – | – | – | – | 0.0018 | 0.0002 | 0.0002 | 0 | 0.0009 | 0 | 0.0026 | 0.0009 | 0.0011 | 0.0015 | 0.0003 | 0.001 |
Vacuole | – | – | – | – | – | – | 0.0054 | 0.005 | 0.0065 | 0.0018 | 0.0088 | 0.0076 | 0.0051 | 0.0094 | 0.0131 | 0.0126 | 0.0016 | 0.0052 |
Vacuole Periphery | – | – | – | – | – | – | 0.0084 | 0.0054 | 0.0057 | 0.0027 | 0.0098 | 0.0159 | 0.0081 | 0.0074 | 0.0084 | 0.0091 | 0.0024 | 0.0035 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 5.0041 | 5.9645 | 7.7453 | 8.1673 | 7.5694 | 7.502 | 7.5384 | 10.9389 | 8.2331 | 10.287 |
Translational Efficiency | 1.3543 | 0.6925 | 0.8583 | 1.1791 | 1.0698 | 1.2411 | 0.9251 | 0.78 | 1.2016 | 1.1418 |
Dataset | Hit |
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Protein Concentration | – |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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