Standard name | |
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Human Ortholog | |
Description | Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC); contributes to nucleocytoplasmic transport and NPC biogenesis; also plays roles in several processes that may require localization of genes or chromosomes at the nuclear periphery, including double-strand break repair, transcription and chromatin silencing; homologous to human NUP107 |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 4 | 0 | 1 | 2 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 4 | – | 1 | 8 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 1 | 3 | 0 | 1 | 2 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 1 | 2 | 1 | – | 6 | 8 | 5 | 0 | 0 | 2 | 0 | 1 | 0 | – | – | – | – | – | – |
Cell Periphery | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 5 | 3 | 8 | 9 | 10 | 14 | 10 | 10 | – | 8 | 8 | 1 | 1 | 8 | 30 | 20 | 17 | 18 | 0 | 0 | 1 | 0 | 0 | 0 |
Endoplasmic Reticulum | 6 | 0 | 2 | 2 | 1 | 1 | 0 | 4 | – | 3 | 0 | 2 | 2 | 1 | 0 | 10 | 8 | 6 | 0 | 0 | 1 | 0 | 1 | 2 |
Endosome | 3 | 0 | 13 | 4 | 10 | 14 | 21 | 21 | – | 10 | 6 | 16 | 1 | 1 | 5 | 5 | 10 | 3 | 1 | 5 | 8 | 1 | 12 | 14 |
Golgi | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 4 | 1 | 7 | 11 |
Mitochondria | 11 | 37 | 51 | 39 | 31 | 152 | 177 | 236 | – | 334 | 300 | 230 | 0 | 1 | 0 | 23 | 24 | 7 | 8 | 9 | 9 | 8 | 47 | 45 |
Nucleus | 11 | 26 | 6 | 12 | 7 | 13 | 9 | 21 | – | 35 | 15 | 16 | 7 | 5 | 12 | 42 | 36 | 19 | 6 | 2 | 3 | 1 | 0 | 0 |
Nuclear Periphery | 204 | 216 | 347 | 214 | 204 | 298 | 334 | 405 | – | 414 | 264 | 325 | 75 | 112 | 143 | 169 | 135 | 78 | 236 | 250 | 407 | 100 | 229 | 167 |
Nucleolus | 26 | 18 | 78 | 72 | 52 | 142 | 157 | 202 | – | 243 | 211 | 203 | 8 | 10 | 13 | 31 | 32 | 21 | 2 | 8 | 4 | 2 | 3 | 3 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 1 | 3 | 1 | – | 2 | 1 | 2 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 4 | 5 |
SpindlePole | 0 | 0 | 1 | 0 | 1 | 2 | 4 | 2 | – | 4 | 3 | 2 | 1 | 1 | 8 | 0 | 2 | 0 | 0 | 1 | 3 | 0 | 1 | 0 |
Vac/Vac Membrane | 68 | 61 | 69 | 23 | 44 | 29 | 30 | 35 | – | 16 | 17 | 36 | 14 | 23 | 63 | 78 | 59 | 37 | 11 | 20 | 8 | 2 | 6 | 12 |
Unique Cell Count | 246 | 268 | 412 | 279 | 269 | 459 | 520 | 659 | 692 | 544 | 573 | 85 | 132 | 214 | 275 | 236 | 145 | 272 | 305 | 467 | 122 | 323 | 273 | |
Labelled Cell Count | 336 | 361 | 575 | 375 | 362 | 667 | 748 | 942 | 1076 | 841 | 839 | 109 | 164 | 276 | 378 | 326 | 189 | 272 | 305 | 467 | 122 | 323 | 273 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 12.9 | 12.7 | 12.3 | 11.5 | 10.7 | 9.0 | 8.5 | 8.5 | – | 7.5 | 7.4 | 8.0 | 12.2 | 11.1 | 11.5 | 8.2 | 8.8 | 10.6 | 13.0 | 13.9 | 14.7 |
Std Deviation (1e-4) | 3.8 | 3.3 | 3.0 | 3.4 | 3.4 | 2.8 | 2.1 | 2.5 | – | 2.3 | 2.3 | 2.3 | 2.9 | 2.8 | 3.5 | 2.3 | 3.1 | 3.6 | 2.8 | 2.7 | 2.8 |
Intensity Change (Log2) | – | – | – | -0.09 | -0.2 | -0.44 | -0.53 | -0.54 | – | -0.72 | -0.73 | -0.63 | -0.01 | -0.15 | -0.1 | -0.59 | -0.48 | -0.21 | 0.08 | 0.17 | 0.26 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 1.1 | 1.4 | 1.0 | 0 | -0.5 | – | -1.1 | -0.6 | 0 | 0 | 0 | 6.0 | 3.5 | 3.3 | 5.1 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Endosome | -1.4 | 0.4 | -0.1 | 0.7 | 0 | – | -1.9 | -2.3 | -0.3 | 0 | 0 | -0.6 | -1.1 | 0.7 | 0 |
Golgi | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 0.6 | -0.3 | 7.2 | 7.6 | 8.4 | – | 12.1 | 13.6 | 9.5 | -3.4 | -4.0 | -5.4 | -1.7 | -0.8 | -2.6 |
Nucleus | 2.3 | 1.1 | 1.4 | 0.3 | 1.8 | – | 3.1 | 1.4 | 1.4 | 0 | 0 | 2.9 | 7.0 | 6.9 | 5.8 |
Nuclear Periphery | -2.5 | -2.7 | -6.5 | -6.8 | -7.9 | – | -8.5 | -11.4 | -9.1 | 0.9 | 0.2 | -5.0 | -6.8 | -7.6 | -7.4 |
Nucleolus | 2.2 | 0.1 | 4.1 | 3.9 | 4.2 | – | 5.7 | 6.6 | 5.7 | -2.1 | -3.1 | -4.3 | -2.7 | -1.8 | -1.2 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vacuole | -3.2 | -0.1 | -4.9 | -5.4 | -6.1 | – | -8.7 | -7.3 | -5.2 | -0.1 | 0.2 | 3.7 | 3.6 | 2.5 | 2.3 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 10.6512 | 9.6575 | 9.3608 | 8.8665 | 9.0529 | 9.1773 | 11.2245 | 12.0531 | 10.5861 | 9.7671 | 9.7166 | 9.9282 | 13.2286 | 12.0901 | 11.7687 | 11.0826 | 11.2475 | 11.2944 |
Actin | 0.0129 | 0.0001 | 0.0044 | 0.0094 | 0.0007 | 0.0012 | 0.0004 | 0.0001 | 0.0168 | 0.0007 | 0.0005 | 0.0001 | 0.0003 | 0 | 0.0002 | 0.0001 | 0.0002 | 0 |
Bud | 0.0001 | 0 | 0.0001 | 0.0001 | 0 | 0 | 0.0001 | 0 | 0.0001 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0.0012 | 0 | 0.0001 | 0.0003 | 0.0002 | 0 | 0.0002 | 0 | 0.0009 | 0 | 0 | 0 | 0.0001 | 0 | 0 | 0 | 0 | 0 |
Bud Periphery | 0.0002 | 0 | 0.0001 | 0.0006 | 0.0002 | 0 | 0.0001 | 0 | 0.0003 | 0.0002 | 0.0001 | 0.0001 | 0.0001 | 0 | 0.0001 | 0.0001 | 0 | 0 |
Bud Site | 0.0007 | 0 | 0.0001 | 0.0005 | 0.0001 | 0 | 0.0009 | 0 | 0.0007 | 0 | 0 | 0 | 0.0001 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0.0001 | 0 | 0 | 0.0001 | 0.0001 | 0 | 0 | 0 | 0.0001 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 0.0026 | 0.0001 | 0.0004 | 0.0002 | 0.0001 | 0 | 0.0016 | 0 | 0.0012 | 0 | 0.0001 | 0 | 0.0001 | 0 | 0 | 0 | 0 | 0 |
Cytoplasmic Foci | 0.0019 | 0 | 0.0004 | 0.0031 | 0.0001 | 0.0003 | 0.0251 | 0 | 0.0009 | 0 | 0.0007 | 0 | 0.0004 | 0 | 0.0002 | 0 | 0.0001 | 0.0001 |
Eisosomes | 0.0002 | 0 | 0 | 0.0002 | 0 | 0 | 0 | 0 | 0.0001 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Endoplasmic Reticulum | 0.0024 | 0.0002 | 0.0005 | 0.0011 | 0.0015 | 0.0002 | 0.0005 | 0.0011 | 0.0056 | 0.0017 | 0.0005 | 0.0003 | 0.0005 | 0.0005 | 0.0004 | 0.0005 | 0.0002 | 0.0001 |
Endosome | 0.0031 | 0.0002 | 0.0004 | 0.0022 | 0.0049 | 0.0012 | 0.0181 | 0.0002 | 0.0027 | 0.0004 | 0.0007 | 0.0002 | 0.0011 | 0.0003 | 0.0002 | 0.0001 | 0.0002 | 0.0001 |
Golgi | 0.0011 | 0 | 0.0006 | 0.0017 | 0.0012 | 0.0008 | 0.0056 | 0.0001 | 0.0006 | 0.0003 | 0.0009 | 0.0001 | 0.0003 | 0.0001 | 0.0002 | 0.0001 | 0.0006 | 0.0001 |
Lipid Particles | 0.0021 | 0.0002 | 0.0009 | 0.0069 | 0.0038 | 0.0012 | 0.0027 | 0.0008 | 0.0025 | 0.0014 | 0.0176 | 0.0005 | 0.0034 | 0.001 | 0.0091 | 0.0008 | 0.0197 | 0.002 |
Mitochondria | 0.0014 | 0.0006 | 0.0007 | 0.0045 | 0.002 | 0.0005 | 0.0007 | 0.0011 | 0.0019 | 0.0015 | 0.0028 | 0.0014 | 0.0011 | 0.0132 | 0.0051 | 0.0005 | 0.0005 | 0.0013 |
None | 0.0051 | 0 | 0.0002 | 0.0006 | 0.0002 | 0.0001 | 0.0002 | 0.0001 | 0.0005 | 0.0003 | 0.0002 | 0.0001 | 0.0002 | 0.0001 | 0.0001 | 0.0001 | 0.0001 | 0 |
Nuclear Periphery | 0.9142 | 0.9085 | 0.9412 | 0.9202 | 0.8707 | 0.9703 | 0.9057 | 0.926 | 0.8998 | 0.9457 | 0.9074 | 0.978 | 0.9515 | 0.9455 | 0.9454 | 0.9647 | 0.94 | 0.9793 |
Nucleolus | 0.002 | 0.0018 | 0.0012 | 0.0009 | 0.0602 | 0.001 | 0.0002 | 0.0003 | 0.0006 | 0.0006 | 0.0041 | 0.0003 | 0.0041 | 0.0001 | 0.0004 | 0.0002 | 0.0069 | 0.0006 |
Nucleus | 0.018 | 0.0644 | 0.021 | 0.0189 | 0.0256 | 0.0089 | 0.0011 | 0.0202 | 0.0167 | 0.0037 | 0.0081 | 0.0026 | 0.004 | 0.0015 | 0.0021 | 0.002 | 0.0023 | 0.0018 |
Peroxisomes | 0.0017 | 0 | 0.0005 | 0.0068 | 0.0001 | 0.0004 | 0.0035 | 0 | 0.0001 | 0 | 0.0002 | 0 | 0.0001 | 0 | 0.0001 | 0 | 0 | 0 |
Punctate Nuclear | 0.0046 | 0.0004 | 0.0028 | 0.0009 | 0.0013 | 0.0009 | 0.0008 | 0.0003 | 0.0009 | 0.0009 | 0.0301 | 0.0004 | 0.0025 | 0.0001 | 0.0003 | 0.0004 | 0.0017 | 0.0009 |
Vacuole | 0.0008 | 0.001 | 0.0002 | 0.0005 | 0.0017 | 0.0002 | 0.0004 | 0.0004 | 0.0007 | 0.0005 | 0.0004 | 0.0003 | 0.0005 | 0.0007 | 0.0003 | 0.0002 | 0.0004 | 0.0002 |
Vacuole Periphery | 0.0234 | 0.0223 | 0.0243 | 0.0205 | 0.0252 | 0.0128 | 0.0321 | 0.0492 | 0.0462 | 0.0419 | 0.0254 | 0.0157 | 0.0295 | 0.0367 | 0.0357 | 0.0302 | 0.0267 | 0.0133 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 26.0547 | 31.2058 | 27.5188 | 31.4529 | 25.2538 | 19.7198 | 33.0384 | 30.2459 | 27.7098 | 34.8855 |
Translational Efficiency | 0.904 | 0.8521 | 0.8213 | 0.7676 | 0.8443 | 1.0067 | 0.7845 | 0.711 | 0.6808 | 0.6133 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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