Standard name
Human Ortholog
Description Protein serine/threonine kinase; required for vesicle formation in autophagy and the cytoplasm-to-vacuole targeting (Cvt) pathway; structurally required for phagophore assembly site formation; during autophagy forms a complex with Atg13p and Atg17p; essential for cell cycle progression from G2/M to G1 under nitrogen starvation
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Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0.07 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0.05 – 0.1 0.06 0.07 0.05 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 – – – – – –
Cell Periphery 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm 0.96 0.95 0.97 0.61 0.56 0.62 0.71 – 0.66 0.67 0.71 0.7 0.92 0.89 0.83 0.94 0.95 0.95 0.86 0.89 0.9 0.75 0.74 0.77
Endoplasmic Reticulum 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0.07 0.07 0
Endosome 0 0 0 0.22 0.2 0.28 0.16 – 0.16 0.09 0.09 0.1 0.06 0.1 0.14 0 0 0 0.06 0 0 0 0.05 0.05
Golgi 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0 0 0 0 0 0 0 – 0.08 0.11 0.12 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleus 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0.17 0.19 0.09 0.06 – 0.06 0.06 0.05 0.06 0 0 0 0 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0 0 0 0 0.1 0.15 0.13 – 0.12 0.14 0.12 0.14 0 0 0 0 0 0.05 0 0 0 0.06 0.06 0.05
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 2 3 3 14 12 5 18 – 6 5 3 7 4 3 5 1 0 0 2 2 0 3 3 5
Bud 1 2 2 6 10 8 25 – 32 19 19 12 18 9 5 0 0 1 1 0 0 4 8 12
Bud Neck 1 0 0 0 2 0 0 – 1 1 2 1 0 0 0 0 0 0 1 2 0 0 2 5
Bud Site 0 0 0 0 1 2 0 – 1 0 1 0 0 0 0 0 0 0 – – – – – –
Cell Periphery 3 3 2 2 3 4 5 – 5 3 3 1 1 1 1 6 7 4 0 0 0 0 0 0
Cytoplasm 306 424 286 122 169 227 330 – 219 228 183 164 369 411 444 325 246 219 284 408 267 311 427 481
Endoplasmic Reticulum 6 6 3 6 3 2 4 – 1 2 2 6 2 0 12 6 10 6 0 4 0 30 39 25
Endosome 8 9 1 44 60 101 74 – 52 30 24 24 23 48 76 5 1 4 19 18 8 12 31 29
Golgi 1 0 0 0 0 0 0 – 0 0 0 0 0 0 1 1 0 0 1 3 0 2 2 4
Mitochondria 2 3 0 1 2 3 9 – 27 38 32 8 2 0 1 4 0 2 3 2 6 13 13 10
Nucleus 3 1 1 0 0 2 5 – 2 5 2 0 0 0 0 2 2 3 2 0 0 1 1 0
Nuclear Periphery 0 0 0 0 0 0 0 – 0 1 0 0 0 0 0 0 0 0 1 0 0 0 2 1
Nucleolus 0 0 0 1 3 8 2 – 6 2 3 1 1 1 2 0 0 0 1 0 0 0 1 0
Peroxisomes 0 0 0 1 0 1 0 – 1 0 1 1 2 6 2 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 1 35 58 32 29 – 20 22 13 14 0 0 6 4 1 0 3 1 0 2 2 7
Vac/Vac Membrane 1 2 3 3 29 56 59 – 40 48 30 34 1 8 6 10 11 11 3 10 7 25 34 31
Unique Cell Count 320 444 296 200 304 364 463 332 340 258 235 402 464 537 346 258 230 331 457 297 417 575 623
Labelled Cell Count 334 453 302 235 352 451 560 413 404 318 273 423 487 561 364 278 250 331 457 297 417 575 623


Punctate Nuclear

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 6.8 7.9 7.1 7.0 8.1 6.5 6.3 – 5.3 4.9 4.7 5.6 6.3 6.9 7.2 13.7 15.0 12.5 5.9 6.4 7.0
Std Deviation (1e-4) 1.0 1.2 1.1 1.6 1.5 1.4 1.1 – 1.1 1.0 0.9 1.4 1.2 1.4 1.2 3.1 2.9 2.8 1.4 1.4 1.7
Intensity Change (Log2) – – – -0.02 0.18 -0.12 -0.18 – -0.43 -0.54 -0.59 -0.34 -0.18 -0.04 0.02 0.95 1.08 0.82 -0.27 -0.14 -0.02


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Cortical Patches 3.6 2.3 0 2.4 – 0 0 0 0 0 0 0 0 0 0
Bud 0 2.3 0 3.4 – 5.0 0 0 3.2 3.0 0 0 0 0 0
Bud Neck 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0
Cytoplasm -10.2 -11.7 -10.5 -8.7 – -9.7 -9.4 -8.4 -8.5 -2.6 -3.9 -5.8 -1.6 -0.8 -0.8
Endoplasmic Reticulum 0 0 0 0 – 0 0 0 0 0 0 1.3 0 2.2 0
Endosome 8.2 7.9 9.7 7.0 – 6.9 0 0 5.3 3.9 5.5 6.6 0 0 0
Golgi 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0
Mitochondria 0 0 0 0 – 5.0 0 0 0 0 0 0 0 0 0
Nucleus 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0
SpindlePole 7.2 7.7 5.0 4.1 – 4.0 0 0 3.9 0 0 0 0 0 0
Vacuole 0 4.6 6.4 5.8 – 5.5 6.1 5.3 6.0 0 0 0 1.7 2.4 2.7

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration 3.8588 5.1824 4.4671 4.4732 3.2326 4.9136 1.9433 3.5697 2.7612 2.7549 2.5493 3.1229 1.9386 3.3603 2.6073 2.8428 2.2969 2.9061
Actin 0.0705 0.0002 0.0147 0.0054 0.0001 0.001 0.0338 0.0092 0.0027 0.0028 0.0166 0.0006 0.0043 0.0036 0.0048 0.0008 0.0017 0.002
Bud 0.0006 0.0002 0.0003 0.0007 0.0001 0.0001 0.0007 0.0051 0.0027 0.0019 0.0012 0.0006 0.0102 0.0352 0.0233 0.0004 0.0681 0.0079
Bud Neck 0.0039 0.0001 0.0004 0.0009 0.0001 0.0017 0.0163 0.0003 0.0031 0.0004 0.0011 0.0007 0.0013 0.0002 0.0006 0.0003 0.0009 0.0011
Bud Periphery 0.0012 0.0001 0.0003 0.0006 0 0.0001 0.0007 0.0017 0.0035 0.005 0.0008 0.0004 0.0066 0.0109 0.0091 0.0002 0.0264 0.0047
Bud Site 0.002 0.0006 0.001 0.0044 0.0001 0.0001 0.0145 0.0079 0.0059 0.0034 0.0011 0.0005 0.0064 0.0171 0.0304 0.0014 0.0047 0.0004
Cell Periphery 0.0005 0.0003 0.0003 0.0002 0.0001 0.0001 0.0003 0.0002 0.0003 0.0004 0.0002 0.0001 0.0006 0.0007 0.0007 0.0005 0.0006 0.0002
Cytoplasm 0.6007 0.8445 0.7336 0.7341 0.7559 0.8118 0.5963 0.8546 0.8209 0.8604 0.5755 0.8259 0.6247 0.7827 0.7089 0.7238 0.659 0.7961
Cytoplasmic Foci 0.0184 0.0289 0.0447 0.0275 0.0349 0.021 0.0665 0.0502 0.0346 0.0177 0.0969 0.0551 0.0414 0.0319 0.0695 0.0506 0.0622 0.0351
Eisosomes 0.001 0 0.0004 0.0002 0 0 0.0002 0 0.0001 0.0001 0.0002 0 0.0001 0 0.0001 0.0012 0 0
Endoplasmic Reticulum 0.012 0.0031 0.0036 0.0043 0.0019 0.0027 0.0054 0.0017 0.0034 0.0013 0.0032 0.0035 0.0081 0.002 0.0039 0.0046 0.0031 0.0032
Endosome 0.0391 0.0269 0.0442 0.0748 0.0385 0.0338 0.0729 0.0292 0.0528 0.0226 0.118 0.0553 0.0465 0.0227 0.0449 0.0947 0.0475 0.0272
Golgi 0.005 0.0009 0.0021 0.0017 0.0013 0.0008 0.012 0.0021 0.0058 0.0038 0.0306 0.0036 0.0017 0.0011 0.0019 0.0014 0.0007 0.0006
Lipid Particles 0.0042 0.0005 0.0022 0.0008 0.0001 0.0004 0.0195 0.0001 0.004 0.0017 0.047 0.0003 0.0019 0.0002 0.0007 0.0022 0.0005 0.0003
Mitochondria 0.0021 0.0001 0.001 0.0031 0.0003 0.0004 0.0126 0.0004 0.0094 0.0495 0.0388 0.0024 0.0017 0.0042 0.0043 0.005 0.0016 0.0008
None 0.2067 0.0875 0.1284 0.1072 0.1639 0.1144 0.0752 0.03 0.0329 0.0147 0.0281 0.0262 0.2266 0.0758 0.0781 0.0727 0.0988 0.1077
Nuclear Periphery 0.0119 0.0006 0.0015 0.004 0.0002 0.0026 0.0201 0.0004 0.0011 0.0006 0.0075 0.0072 0.0027 0.0007 0.0021 0.0023 0.0017 0.0021
Nucleolus 0.0006 0 0.0002 0.0009 0 0.0002 0.0038 0.0001 0.0004 0.0003 0.0008 0.0005 0.0004 0.0007 0.001 0.0161 0.0006 0.0003
Nucleus 0.0038 0.0008 0.0016 0.006 0.0004 0.0018 0.0162 0.0012 0.0017 0.0011 0.0019 0.0065 0.0033 0.0023 0.0035 0.0042 0.0037 0.0026
Peroxisomes 0.0024 0.0001 0.0049 0.0006 0.0002 0.0002 0.0085 0.0008 0.0027 0.0013 0.0073 0.0012 0.0005 0.0005 0.0007 0.0006 0.0005 0.0003
Punctate Nuclear 0.0061 0.0003 0.0028 0.002 0.0001 0.0017 0.0153 0.0006 0.0007 0.0004 0.0116 0.0024 0.0035 0.001 0.0032 0.0024 0.0038 0.0019
Vacuole 0.0056 0.0038 0.0105 0.0174 0.0015 0.0043 0.0072 0.0037 0.0095 0.0084 0.0078 0.0053 0.0067 0.0056 0.007 0.0122 0.0121 0.0045
Vacuole Periphery 0.0016 0.0004 0.0011 0.0032 0.0004 0.0008 0.0021 0.0005 0.0015 0.0023 0.004 0.0018 0.0008 0.0007 0.0013 0.0024 0.0019 0.0009

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 5.9389 3.6614 8.1507 11.0391 4.7793 8.187 13.9751 15.8662 14.6729 11.0618
Translational Efficiency 0.6391 1.2717 0.7452 0.6315 0.7743 0.7762 0.553 0.4591 0.6091 0.5935

Hit Data

Dataset Hit
Protein Concentration ✘
Protein Localization ✘
Gene Expression ✘
Translational Efficiency ✘

Micrographs

Cell Count

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
1760 2314 1130 1706 976 2315 1850 971 2736 4629 2980 2677

Protein Abundance

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Mean 760.73 914.76 1001.84 925.63 754.04 824.29 841.72 913.78 758.34 869.52 902.44 921.33
Standard Deviation 93.60 116.35 131.11 137.86 125.66 232.39 97.41 180.67 106.20 189.27 135.81 154.86
Intensity Change Log 2 — 0.266009 0.397196 0.283051 — 0.128511 0.158699 0.277206 — 0.199201 0.283396 0.280144

Localization Score (DeepLoc)

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Actin 0.000169 0.000119 0.000300 0.000929 0.000152 0.000270 0.000139 0.000383 0.000163 0.000195 0.000200 0.000731
Bud Neck 0.018829 0.007385 0.006089 0.007391 0.008770 0.010744 0.008581 0.006957 0.015241 0.009065 0.007636 0.007234
Bud Site 0.012825 0.014987 0.014802 0.052752 0.013501 0.019827 0.010246 0.060476 0.013066 0.017407 0.011973 0.055554
Cell Periphery 0.000147 0.000035 0.000074 0.000083 0.000138 0.000084 0.000090 0.000157 0.000144 0.000059 0.000084 0.000110
Cytoplasm 0.486911* 0.620301* 0.602920* 0.567483* 0.540330* 0.501706* 0.634477* 0.346501* 0.505967* 0.560990* 0.622511* 0.487329*
Cytoplasmic Foci 0.249291* 0.162431 0.079383 0.091352 0.225413* 0.253354* 0.049692 0.112853 0.240773* 0.207902* 0.060951 0.099151
Eisosomes 0.000142 0.000017 0.000021 0.000026 0.000068 0.000054 0.000036 0.000015 0.000115 0.000036 0.000030 0.000022
Endoplasmic Reticulum 0.001384 0.000273 0.001401 0.000495 0.001913 0.000474 0.000832 0.000475 0.001573 0.000373 0.001048 0.000488
Endosome 0.068508 0.042031 0.026658 0.022091 0.049726 0.058697 0.014767 0.130230 0.061808 0.050366 0.019276 0.061315
Golgi 0.008368 0.009011 0.000584 0.003302 0.004703 0.014348 0.000415 0.003258 0.007061 0.011680 0.000479 0.003287
Lipid Particles 0.005353 0.001577 0.002182 0.001820 0.004463 0.002819 0.001572 0.001972 0.005036 0.002198 0.001804 0.001875
Mitochondria 0.001534 0.002304 0.000231 0.001751 0.001076 0.002696 0.000296 0.001024 0.001371 0.002500 0.000271 0.001487
Mitotic Spindle 0.000933 0.009713 0.032692 0.037264 0.000913 0.003825 0.004254 0.025566 0.000926 0.006768 0.015037 0.033021
None 0.001921 0.000558 0.002851 0.001916 0.002452 0.001150 0.003951 0.005350 0.002110 0.000854 0.003534 0.003161
Nuclear Periphery 0.000071 0.000137 0.000958 0.000393 0.000220 0.000069 0.000586 0.000258 0.000124 0.000103 0.000727 0.000344
Nuclear Periphery Foci 0.000393 0.000228 0.009892 0.001451 0.001645 0.000338 0.001715 0.002290 0.000840 0.000283 0.004815 0.001755
Nucleolus 0.000727 0.000380 0.000912 0.000292 0.001244 0.000472 0.000854 0.000792 0.000911 0.000426 0.000876 0.000474
Nucleus 0.014448 0.008240 0.087910 0.035859 0.027200 0.010946 0.121754 0.007679 0.018997 0.009593 0.108921 0.025638
Peroxisomes 0.004483 0.005362 0.005697 0.011388 0.003042 0.006522 0.001797 0.009102 0.003969 0.005942 0.003276 0.010559
Vacuole 0.119969 0.110705 0.124134 0.161428 0.109512 0.107792 0.143051 0.281678* 0.116239 0.109248 0.135878 0.205045*
Vacuole Periphery 0.003593 0.004207 0.000309 0.000531 0.003515 0.003815 0.000895 0.002984 0.003566 0.004011 0.000673 0.001421

Localization Changes (T-score)

R1 R2 R1 & R2
UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14
Actin 2.08 -5.55 -3.35 -3.88 -1.58 -2.45 0.09 -2.51 -1.09 -2.45 -1.12 -2.57 -4.12 -3.57 -3.20
Bud Neck 8.88 7.00 8.75 -0.33 1.55 -1.66 -0.31 1.71 5.06 2.20 6.59 5.63 8.55 3.40 2.40
Bud Site -1.90 -1.93 -6.39 -5.41 -4.65 -4.36 2.62 -9.35 -7.89 -10.17 -4.96 1.26 -11.14 -9.05 -11.18
Cell Periphery 18.19* 9.08 12.83 -9.55 3.92 3.83 5.17 0.37 -0.98 -1.22 11.75 9.57 3.99 -1.66 -0.42
Cytoplasm -14.83 -0.52 0.28 13.82 0.72 3.61 -4.60 13.94 12.50 19.48 -7.86 -6.29 8.66 16.24 14.18
Cytoplasmic Foci 14.53 27.20 28.59 15.35 -0.47 -3.84 26.03 15.71 22.50 -8.65 6.95 40.67 32.27 28.20 -6.74
Eisosomes 15.48 14.35 14.32 -6.82 -0.44 2.85 7.98 13.74 10.26 12.75 14.13 15.30 17.27 6.29 8.35
Endoplasmic Reticulum 4.75 -1.35 3.73 -3.89 8.86 4.17 3.14 4.40 0.74 3.20 6.15 2.00 5.68 -1.88 7.56
Endosome 7.66 12.69 16.72 11.65 3.56 -2.36 10.16 -9.09 -8.16 -16.04 4.42 17.54 4.05 0.46 -11.73
Golgi -0.75 17.64 11.54 12.29 -1.33 -10.76 9.40 3.09 12.23 -3.60 -8.08 19.46 11.37 17.44 -3.26
Lipid Particles 12.53 6.32 7.06 -3.54 1.71 3.57 6.13 4.88 1.70 -1.75 10.72 10.00 8.60 -1.20 -0.89
Mitochondria -1.48 5.08 2.18 3.04 -1.53 -4.00 3.20 0.67 3.87 -1.29 -3.43 5.98 2.19 4.98 -2.00
Mitotic Spindle -5.78 -10.77 -11.21 -7.39 2.75 -2.86 -4.04 -8.24 -7.42 -6.67 -6.43 -11.29 -13.91 -10.84 -3.83
None 3.31 -1.62 0.38 -6.70 3.68 2.34 -0.89 -1.09 -2.09 -0.52 3.70 -1.64 -0.78 -3.33 0.65
Nuclear Periphery -0.88 -17.35 -19.66 -9.33 8.03 3.95 -9.37 -2.94 -7.75 6.62 0.46 -20.64 -17.86 -12.87 7.39
Nuclear Periphery Foci 2.38 -10.78 -10.95 -11.40 9.24 5.80 -2.85 -2.89 -5.24 -1.07 6.02 -11.57 -7.28 -9.81 7.45
Nucleolus 1.06 -2.38 -0.10 -5.01 3.93 3.37 -0.64 1.06 -2.11 1.87 2.12 -2.32 0.37 -4.11 4.39
Nucleus 8.97 -20.31 -16.39 -20.35 12.00 5.46 -19.98 6.73 2.64 31.11 7.76 -31.93 -7.54 -16.23 26.97
Peroxisomes -1.75 -0.15 -3.52 -2.21 -2.74 -5.83 1.04 -5.35 -1.34 -6.25 -5.21 1.75 -5.93 -2.30 -6.80
Vacuole 1.60 -10.72 -23.44 -25.14 -8.97 0.27 -11.07 -19.58 -20.88 -12.49 1.71 -15.34 -30.51 -32.95 -16.20
Vacuole Periphery -1.62 13.48 13.50 17.22 1.07 -0.61 5.42 2.11 4.27 -4.55 -1.51 10.47 10.53 16.78 -2.47
Protein Complexes26S Proteasome complex37S mitochondrial small ribosomal subunit54S mitochondrial large ribosomal subunit60S cytosolic large ribosomal subunitAar2-U5 snRNPAnaphase-Promoting Complex variant 1Anaphase-Promoting Complex variant 2Anaphase-Promoting Complex variant 3Anaphase-Promoting Complex variant 4Arp2/3 complexATG1 kinase complexBLOC-1 complexCcr4-Not complexCentral kinetochore CTF19 complexCleavage and polyadenylation specificity factorcomplexCMG helicase complexCMG-Pol epsilon complexCOMPASS complexCOP9 signalosome COPI vesicle coat complexCoQ6 biosynthesis complexCore mediator complexCORVET complexCTF18-RFC complexCURI complex variant 1CURI complex variant 2CURI complex variant 3Cytoplasmic exosome complex, DIS3 variantDASH complexDNA-directed RNA Polymerase I complexDNA-directed RNA polymerase II complexDNA-directed RNA polymerase III complexDNA replication factor C complexEGO complexELG1-RFC complex Elongator holoenzyme complexEndoplasmic Reticulum Membrane ComplexEukaryotic translation initiation factor 2BcomplexEukaryotic translation initiation factor 3core complexExocystExomer complexFAR complexGeneral transcription factor complex TFIIDGeneral transcription factor complex TFIIHGET4-GET5 transmembrane domain recognition complexGID ubiquitin ligase complexGin4 complexGolgi transport complexGSE complexHMC complexHOPS complexINO80 chromatin remodeling complexLSM1-7 complexLsm1-7-Pat1 complexLSM2-7 complexLSM2-8 complexMCM complexMICOS complexMitochondrial electron transport complex IIIMitochondrial inner membrane pre-sequence translocasecomplexMitochondrial outer membrane translocase holocomplexMitochondrial proton-transporting ATP synthase complexMitochondrial pyruvate dehydrogenase complexNineTeen complexNOP8 60s ribosome pre-assembly complexNuA3 histone acetyltransferase complexNuA4 histone acetyltransferase complexNuclear condensin complexNuclear/nucleolar exosome complex, DIS3-RRP6 variantNuclear pore complexNucleolar ribonuclease MRP complexNucleolar ribonuclease P complexOligosaccharyl transferase complex variant 1Oligosaccharyl transferase complex variant 2PAF1 complexPAS complexPhosphatidylinositol 3-kinase complex IPolarisomePrefoldin complexPRP19-associated complexRad17 RFC-like complexRetromer complexRPD3L histone deacetylase complexRPD3S histone deacetylase complexRQC complexRSC complex variant RSC1RSC complex variant RSC2SAGA complexSCF-Met30 ubiquitin ligase complexSCF-Ufo1 ubiquitin ligase complexSEA complexSeptin complexSET3C histone deacetylase complexSignal recognition particleSLIK (SAGA-like) complexSmall ribosomal subunit processome, variant1Small ribosomal subunit processome, variant2Small ribosomal subunit processome, variant3SMC5-SMC6 SUMO ligase complexSm complexSpliceosomal commitment complexSPOTS complexSWI/SNF chromatin remodelling complexSwr1 chromatin remodelling complexTHO complexTranscription factor TFIIIC complexTranslocon complexTRAPPIII protein complexTRAPPII protein complexTRAPPI protein complexTREX complexU1 snRNPU2 snRNPU4 snRNPU4/U6 snRNPU4/U6.U5 tri-snRNP complexU5 snRNPU6 snRNP complexUTP-A complexUTP-B complexUTP-C complex variant 1UTP-C complex variant 2UTP-C complex variant 3Vacuolar proton translocating ATPase complex,Golgi variantVacuolar proton translocating ATPase complex,vacuole variantCellular Components••••••••••••••••actinbud neckcell peripherycytoplasmendosomeERGolgimitochondrionmixednuclear peripherynucleolusnucleusperoxisomespindle polevacuolar membranevacuole
Standard name
Human Ortholog
Description Protein serine/threonine kinase; required for vesicle formation in autophagy and the cytoplasm-to-vacuole targeting (Cvt) pathway; structurally required for phagophore assembly site formation; during autophagy forms a complex with Atg13p and Atg17p; essential for cell cycle progression from G2/M to G1 under nitrogen starvation
Localization
Cell Percentages cytoplasm (97%)
Cell Cycle Regulation No
Subcompartmental Group cytoplasm-4

Atg1

Atg1


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)
Molecular Function (Gene Ontology)
Cellular Component (Gene Ontology)

Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Atg1-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available