Standard name | |
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Human Ortholog | |
Description | Protein that exhibits physical and genetic interactions with Rpb8p; Rpb8p is a subunit of RNA polymerases I, II, and III; computational analysis of large-scale protein-protein interaction data suggests a role in chromosome segregation |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 1 | 0 | 6 | 10 | 3 | 2 | 2 | 3 | 3 | 0 | 0 | 0 | 2 | 5 | 9 | 3 | 0 | 1 | 3 | 5 | 20 | 2 | 9 | 24 |
Bud | 0 | 0 | 11 | 14 | 17 | 23 | 26 | 29 | 9 | 25 | 22 | 27 | 1 | 2 | 8 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 0 |
Bud Neck | 0 | 0 | 2 | 0 | 2 | 2 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 3 | 7 | 2 | 4 | 5 |
Bud Site | 0 | 0 | 1 | 0 | 1 | 0 | 1 | 2 | 2 | 2 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 0 | 1 | 6 | 21 | 17 | 16 | 13 | 13 | 14 | 15 | 15 | 20 | 4 | 26 | 26 | 63 | 40 | 50 | 0 | 1 | 14 | 1 | 6 | 12 |
Cytoplasm | 3 | 11 | 138 | 166 | 228 | 237 | 309 | 374 | 210 | 284 | 186 | 209 | 8 | 84 | 113 | 347 | 231 | 241 | 3 | 16 | 27 | 4 | 19 | 10 |
Endoplasmic Reticulum | 13 | 6 | 14 | 12 | 20 | 17 | 13 | 6 | 13 | 14 | 3 | 10 | 4 | 14 | 8 | 4 | 5 | 11 | 54 | 29 | 87 | 18 | 65 | 80 |
Endosome | 0 | 0 | 2 | 0 | 8 | 1 | 2 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 1 |
Mitochondria | 0 | 0 | 21 | 77 | 68 | 121 | 174 | 235 | 212 | 275 | 165 | 280 | 1 | 1 | 11 | 4 | 2 | 1 | 2 | 6 | 46 | 4 | 16 | 13 |
Nucleus | 0 | 0 | 0 | 1 | 0 | 2 | 2 | 3 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 9 | 8 | 14 | 0 | 0 | 0 | 0 | 0 | 0 |
Nuclear Periphery | 1 | 0 | 1 | 1 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 4 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
SpindlePole | 0 | 0 | 0 | 0 | 3 | 1 | 1 | 1 | 2 | 3 | 0 | 1 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vac/Vac Membrane | 0 | 0 | 3 | 3 | 3 | 3 | 10 | 17 | 3 | 12 | 6 | 16 | 0 | 0 | 0 | 19 | 42 | 17 | 3 | 5 | 10 | 3 | 10 | 4 |
Unique Cell Count | 16 | 16 | 185 | 249 | 319 | 359 | 457 | 573 | 392 | 510 | 309 | 440 | 16 | 111 | 143 | 392 | 276 | 279 | 73 | 72 | 223 | 39 | 141 | 156 |
Labelled Cell Count | 18 | 18 | 205 | 305 | 374 | 425 | 554 | 687 | 471 | 634 | 399 | 568 | 20 | 132 | 177 | 452 | 328 | 336 | 73 | 72 | 223 | 39 | 141 | 156 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 6.2 | 5.8 | 4.3 | 4.1 | 4.5 | 4.0 | 3.8 | 3.9 | 3.4 | 3.5 | 3.5 | 3.3 | 5.4 | 5.8 | 5.0 | 10.0 | 10.9 | 11.4 | – | 5.6 | 6.7 |
Std Deviation (1e-4) | 0.7 | 1.9 | 0.6 | 0.9 | 1.2 | 1.2 | 1.1 | 1.3 | 0.9 | 0.9 | 1.1 | 1.0 | 0.4 | 0.8 | 0.6 | 1.5 | 1.5 | 1.7 | – | 0.9 | 1.6 |
Intensity Change (Log2) | – | – | – | -0.06 | 0.05 | -0.1 | -0.17 | -0.14 | -0.36 | -0.31 | -0.29 | -0.41 | 0.31 | 0.43 | 0.22 | 1.21 | 1.33 | 1.4 | – | 0.37 | 0.63 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1.3 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | -0.1 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 5.4 | 4.5 | 4.4 | 4.0 | 4.8 |
Cytoplasm | -1.8 | -0.8 | -2.0 | -1.7 | -2.4 | -4.8 | -4.5 | -3.3 | -6.2 | -2.1 | 0.2 | 0.9 | 4.3 | 2.4 | 3.2 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1.4 | -0.7 | -4.2 | -3.0 | -1.7 |
Endosome | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | -3.3 | -1.1 | -5.7 | -5.1 | -5.5 |
Nucleus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3.1 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vacuole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1.3 | 0 | 0 | 0 | 1.9 | 4.8 | 2.3 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 1.8855 | 2.2839 | 1.9203 | 1.7866 | 1.56 | 2.13 | 2.4321 | 3.1906 | 3.3319 | 3.1749 | 2.9301 | 3.3489 | 2.0959 | 2.4753 | 2.3783 | 2.3825 | 2.1197 | 2.2434 |
Actin | 0.031 | 0.012 | 0.0233 | 0.0588 | 0.052 | 0.024 | 0.0277 | 0.0034 | 0.0073 | 0.0065 | 0.0147 | 0.0055 | 0.0059 | 0.0149 | 0.0136 | 0.0065 | 0.0123 | 0.0075 |
Bud | 0.0005 | 0.0003 | 0.0009 | 0.0002 | 0.0086 | 0.0004 | 0.0009 | 0.0002 | 0.0002 | 0.0015 | 0.0005 | 0.0011 | 0.0013 | 0.0279 | 0.003 | 0.0029 | 0.0002 | 0.0004 |
Bud Neck | 0.0102 | 0.0018 | 0.0047 | 0.0034 | 0.0166 | 0.0395 | 0.0119 | 0.0012 | 0.0017 | 0.0036 | 0.015 | 0.0301 | 0.0054 | 0.0023 | 0.0027 | 0.0009 | 0.0053 | 0.0184 |
Bud Periphery | 0.0015 | 0.0008 | 0.004 | 0.0012 | 0.0158 | 0.003 | 0.0018 | 0.0004 | 0.0008 | 0.0025 | 0.0008 | 0.0043 | 0.0007 | 0.007 | 0.0047 | 0.0023 | 0.0009 | 0.0006 |
Bud Site | 0.0094 | 0.0156 | 0.0126 | 0.0006 | 0.0379 | 0.0012 | 0.0182 | 0.0139 | 0.002 | 0.0016 | 0.0073 | 0.0007 | 0.0082 | 0.0561 | 0.0239 | 0.0014 | 0.0007 | 0.0004 |
Cell Periphery | 0.0244 | 0.024 | 0.0226 | 0.008 | 0.0084 | 0.0161 | 0.0101 | 0.0123 | 0.0136 | 0.0095 | 0.0065 | 0.0073 | 0.0222 | 0.0202 | 0.023 | 0.0071 | 0.0117 | 0.0101 |
Cytoplasm | 0.375 | 0.533 | 0.4392 | 0.2087 | 0.297 | 0.5019 | 0.3908 | 0.5764 | 0.6149 | 0.5119 | 0.4685 | 0.5745 | 0.4624 | 0.5779 | 0.4906 | 0.3762 | 0.5479 | 0.6038 |
Cytoplasmic Foci | 0.0317 | 0.0248 | 0.0262 | 0.0287 | 0.0378 | 0.0219 | 0.0367 | 0.0153 | 0.0162 | 0.0174 | 0.0912 | 0.0217 | 0.0299 | 0.0158 | 0.0215 | 0.0148 | 0.0342 | 0.0178 |
Eisosomes | 0.0018 | 0.001 | 0.0008 | 0.0006 | 0.0013 | 0.0007 | 0.0005 | 0.0004 | 0.0003 | 0.0002 | 0.0003 | 0.0002 | 0.0011 | 0.0013 | 0.0012 | 0.001 | 0.0004 | 0.0005 |
Endoplasmic Reticulum | 0.3133 | 0.2393 | 0.3235 | 0.5055 | 0.3094 | 0.3088 | 0.2082 | 0.1719 | 0.2295 | 0.3019 | 0.219 | 0.2589 | 0.2332 | 0.0925 | 0.2121 | 0.3525 | 0.2407 | 0.1814 |
Endosome | 0.0396 | 0.0204 | 0.0271 | 0.036 | 0.032 | 0.0179 | 0.0343 | 0.0127 | 0.0165 | 0.0267 | 0.0568 | 0.0188 | 0.0151 | 0.0099 | 0.0116 | 0.0125 | 0.0217 | 0.01 |
Golgi | 0.0173 | 0.0068 | 0.0123 | 0.0092 | 0.0193 | 0.0056 | 0.0149 | 0.003 | 0.0091 | 0.0061 | 0.0146 | 0.0066 | 0.0057 | 0.0037 | 0.0061 | 0.0049 | 0.0056 | 0.0042 |
Lipid Particles | 0.0442 | 0.0736 | 0.034 | 0.0693 | 0.0519 | 0.0173 | 0.052 | 0.0147 | 0.017 | 0.0054 | 0.0189 | 0.0164 | 0.0369 | 0.0178 | 0.0218 | 0.0178 | 0.0339 | 0.0161 |
Mitochondria | 0.0045 | 0.0006 | 0.012 | 0.0445 | 0.0593 | 0.001 | 0.0038 | 0.0006 | 0.0012 | 0.0017 | 0.0016 | 0.0025 | 0.0027 | 0.0029 | 0.0011 | 0.0009 | 0.0017 | 0.0007 |
None | 0.046 | 0.0291 | 0.0321 | 0.0015 | 0.0121 | 0.0271 | 0.1625 | 0.1611 | 0.0541 | 0.092 | 0.0608 | 0.0421 | 0.1409 | 0.1371 | 0.149 | 0.1725 | 0.0719 | 0.1181 |
Nuclear Periphery | 0.0242 | 0.0048 | 0.0049 | 0.0052 | 0.0082 | 0.0041 | 0.0026 | 0.0024 | 0.0033 | 0.0038 | 0.0031 | 0.0017 | 0.0032 | 0.0027 | 0.0036 | 0.0063 | 0.0022 | 0.0017 |
Nucleolus | 0.0008 | 0.0003 | 0.0003 | 0.0001 | 0.0016 | 0.0002 | 0.0011 | 0.0009 | 0.0001 | 0.0001 | 0.0005 | 0.0001 | 0.0032 | 0.0007 | 0.0006 | 0.0005 | 0.0001 | 0.0002 |
Nucleus | 0.0041 | 0.0017 | 0.0014 | 0.001 | 0.008 | 0.0016 | 0.0016 | 0.002 | 0.0011 | 0.0013 | 0.0014 | 0.001 | 0.0064 | 0.0023 | 0.0018 | 0.0028 | 0.0013 | 0.0015 |
Peroxisomes | 0.0064 | 0.0005 | 0.0085 | 0.0084 | 0.0053 | 0.0006 | 0.0071 | 0.0002 | 0.005 | 0.0007 | 0.0087 | 0.0026 | 0.0022 | 0.0005 | 0.001 | 0.0005 | 0.0005 | 0.0003 |
Punctate Nuclear | 0.0059 | 0.0018 | 0.0017 | 0.0009 | 0.0032 | 0.0015 | 0.0055 | 0.0011 | 0.0006 | 0.0006 | 0.0038 | 0.0007 | 0.0075 | 0.0019 | 0.0024 | 0.0104 | 0.0021 | 0.0029 |
Vacuole | 0.0066 | 0.0075 | 0.0073 | 0.007 | 0.0126 | 0.0053 | 0.0072 | 0.0056 | 0.0054 | 0.0045 | 0.0052 | 0.0028 | 0.0056 | 0.0044 | 0.0043 | 0.0048 | 0.0044 | 0.003 |
Vacuole Periphery | 0.0017 | 0.0003 | 0.0007 | 0.0012 | 0.0016 | 0.0004 | 0.0005 | 0.0003 | 0.0003 | 0.0005 | 0.0006 | 0.0003 | 0.0003 | 0.0003 | 0.0003 | 0.0005 | 0.0003 | 0.0002 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 13.1498 | 18.5976 | 13.8002 | 19.0433 | 15.5225 | 13.3387 | 23.4164 | 17.0018 | 17.8746 | 21.3489 |
Translational Efficiency | 0.6943 | 0.4913 | 0.5534 | 0.3033 | 0.3787 | 0.497 | 0.3646 | 0.447 | 0.4149 | 0.3953 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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