Standard name
Human Ortholog
Description 6-phosphogluconolactonase; protein abundance increases in response to DNA replication stress; SOL4 has a paralog, SOL3, that arose from the whole genome duplication
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Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0.06 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0.05 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 – – – – – –
Cell Periphery 0 0 0.05 0 0 0 0 0 0 0 – 0.05 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm 0.98 0.99 1.0 1.0 0.92 0.84 0.83 0.65 0.7 0.64 – 0.76 0.98 0.99 0.99 0.98 0.95 0.95 0.9 0.93 0.77 0.91 0.9 0.88
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0.05 0 0 0 0 0 0 0
Endosome 0 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0 0 0 0 0.05 0.07 0.11 0.06 0.3 0.44 – 0.17 0 0 0 0 0 0 0 0 0.08 0 0 0
Nucleus 0 0 0 0 0 0 0 0.12 0.05 0.08 – 0.05 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0.06 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0 0 0 0 0 0.09 0.06 0.12 0.08 0.08 – 0.1 0 0 0 0 0.11 0.12 0 0 0.07 0 0.05 0
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 1 1 0 1 0 0
Bud 0 2 0 0 0 0 1 1 1 1 – 0 0 0 0 0 0 0 2 9 0 1 0 2
Bud Neck 1 0 0 0 0 2 0 0 0 0 – 0 0 0 0 0 0 0 2 0 0 1 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 – – – – – –
Cell Periphery 0 1 1 0 0 0 0 0 0 0 – 2 0 0 1 3 4 2 0 0 0 0 0 0
Cytoplasm 394 588 20 18 34 36 39 11 51 16 – 32 83 279 269 297 243 231 369 546 30 171 93 139
Endoplasmic Reticulum 0 1 0 0 1 0 0 0 1 0 – 0 0 0 0 8 13 9 0 0 0 1 0 0
Endosome 1 1 0 0 0 0 0 0 0 0 – 0 0 0 0 0 1 0 2 5 0 0 0 0
Golgi 1 0 0 0 0 0 0 0 0 0 – 0 0 0 0 1 1 0 4 4 0 0 0 0
Mitochondria 3 2 0 0 2 3 5 1 22 11 – 7 0 0 2 5 0 4 11 5 3 0 1 2
Nucleus 0 0 0 0 0 0 2 2 4 2 – 2 0 5 2 0 3 2 0 1 0 1 0 0
Nuclear Periphery 0 1 0 0 0 0 0 1 0 1 – 0 0 0 0 0 0 0 1 0 0 0 0 0
Nucleolus 0 0 0 0 1 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 – 0 1 0 0 0 0 0 2 3 0 0 0 0
Vac/Vac Membrane 3 0 0 0 1 4 3 2 6 2 – 4 1 1 1 10 28 30 4 2 2 3 5 6
Unique Cell Count 402 592 20 18 37 43 47 17 73 25 42 85 283 271 304 255 243 409 586 40 188 104 159
Labelled Cell Count 403 596 21 18 39 45 50 18 85 33 47 85 285 275 324 293 278 409 586 40 188 104 159


Cytoplasm, Nucleus

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 4.4 5.1 4.5 4.4 5.3 5.9 6.2 6.3 5.7 5.7 – 6.9 6.1 7.3 8.1 9.8 12.1 11.6 9.7 5.9 10.4
Std Deviation (1e-4) 1.6 1.6 0.5 0.4 1.8 1.7 2.4 2.5 2.7 3.2 – 4.2 1.7 2.8 3.5 3.2 4.1 4.4 17.3 1.7 19.1
Intensity Change (Log2) – – – -0.05 0.23 0.38 0.47 0.48 0.35 0.34 – 0.61 0.44 0.7 0.85 1.13 1.43 1.36 1.11 0.39 1.21


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Actin – – – – – – – – – – – – – – –
Bud – 0 0 0 0 0 0 – 0 0 0 0 0 0 0
Bud Neck – 0 0 0 0 0 0 – 0 0 0 0 0 0 0
Bud Site – 0 0 0 0 0 0 – 0 0 0 0 0 0 0
Cell Periphery – 0 0 0 0 0 0 – 0 0 0 0 0 0 0
Cyto – – – – – – – – – – – – – – –
Endoplasmic Reticulum – 0 0 0 0 0 0 – 0 0 0 0 0 0 0
Endosome – 0 0 0 0 0 0 – 0 0 0 0 0 0 0
Golgi – 0 0 0 0 0 0 – 0 0 0 0 0 0 0
Mitochondria – 0 0 0 0 0 0 – 0 0 0 0 0 0 0
Nuclear Periphery – 0 0 0 0 0 0 – 0 0 0 0 0 0 0
Nuc – – – – – – – – – – – – – – –
Nucleolus – 0 0 0 0 0 0 – 0 0 0 0 0 0 0
Peroxisomes – 0 0 0 0 0 0 – 0 0 0 0 0 0 0
SpindlePole – 0 0 0 0 0 0 – 0 0 0 0 0 0 0
Vac – – – – – – – – – – – – – – –
Cortical Patches – 0 0 0 0 0 0 – 0 0 0 0 0 0 0
Cytoplasm – -1.3 -1.9 -2.0 -2.9 -2.8 -3.0 – -2.4 -0.7 -0.5 -0.4 -0.7 -1.0 -1.0
Nucleus – 0 0 0 0 0 0 – 0 0 0 0 0 0 0
Vacuole – 0 0 0 0 0 0 – 0 0 0 0 0 0 0

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration 4.275 3.1738 2.8474 3.3465 2.8533 3.2627 12.053 12.5208 12.6372 11.5783 11.6937 12.9677 7.0506 7.6174 6.836 6.8307 6.6893 7.3705
Actin 0.0292 0.0059 0.0064 0.0005 0.0003 0.0004 0.0144 0.0009 0.0039 0.001 0.0064 0.0076 0.0298 0.0084 0.0138 0.0106 0.0218 0.0039
Bud 0.0002 0.0011 0.0003 0.0002 0.0001 0.0002 0.0058 0.0007 0.0009 0.0002 0.0032 0.0014 0.0007 0.0049 0.0015 0.0016 0.0002 0.0006
Bud Neck 0.0011 0.0003 0.0008 0.0004 0.0004 0.0011 0.0052 0.0003 0.0005 0.0007 0.0007 0.0015 0.0007 0.0004 0.0013 0.0035 0.0006 0.0055
Bud Periphery 0.0002 0.0002 0.0002 0.0001 0 0.0001 0.0062 0.0001 0.0004 0.0001 0.0017 0.0011 0.0007 0.0015 0.0011 0.0011 0.0003 0.0003
Bud Site 0.0006 0.0019 0.0009 0.0001 0.0001 0.0001 0.004 0.0033 0.0007 0.0002 0.0003 0.0002 0.0011 0.0107 0.0039 0.0013 0.0004 0.0016
Cell Periphery 0.0001 0.0001 0.0001 0 0 0 0.0003 0.0001 0.0001 0 0 0 0.0001 0.0002 0.0003 0.0001 0.0002 0.0001
Cytoplasm 0.8233 0.8684 0.8669 0.9254 0.9359 0.9125 0.8374 0.9523 0.9182 0.926 0.9335 0.9132 0.746 0.866 0.8655 0.7935 0.7244 0.8602
Cytoplasmic Foci 0.0076 0.0042 0.0076 0.0072 0.0092 0.0087 0.0127 0.0024 0.006 0.0044 0.0068 0.0064 0.0273 0.0056 0.0035 0.0186 0.0056 0.0117
Eisosomes 0.0002 0.0001 0.0001 0 0 0 0.0001 0 0 0 0 0 0.0001 0 0.0001 0 0.0003 0.0001
Endoplasmic Reticulum 0.0047 0.0028 0.0058 0.0017 0.0014 0.0027 0.0046 0.0014 0.0017 0.0018 0.0044 0.0023 0.0045 0.002 0.004 0.0059 0.0086 0.0027
Endosome 0.0087 0.0015 0.0073 0.0011 0.0016 0.0042 0.0129 0.0007 0.0011 0.001 0.0066 0.0034 0.0155 0.0055 0.0043 0.021 0.0149 0.0035
Golgi 0.0021 0.0002 0.0007 0.0001 0.0001 0.0001 0.003 0.0001 0.0005 0.0001 0.0006 0.0009 0.0046 0.0018 0.002 0.0031 0.0044 0.0012
Lipid Particles 0.0014 0.0001 0.0004 0.0002 0 0.0001 0.0023 0 0.0002 0.0001 0.0001 0.0018 0.0059 0.0006 0.001 0.0008 0.0096 0.0016
Mitochondria 0.0006 0.0002 0.0003 0.0001 0.0001 0.0002 0.0025 0.0001 0.0003 0.0002 0.0007 0.0003 0.0021 0.0012 0.0057 0.0014 0.0065 0.0006
None 0.0893 0.1017 0.087 0.0545 0.0426 0.0498 0.0256 0.0189 0.0434 0.0317 0.0048 0.019 0.1111 0.0763 0.0757 0.08 0.0668 0.0914
Nuclear Periphery 0.007 0.0011 0.0031 0.0012 0.0013 0.002 0.0099 0.0015 0.0017 0.0014 0.0044 0.0029 0.0131 0.0027 0.0029 0.0151 0.0432 0.0027
Nucleolus 0.0002 0.0001 0.0001 0 0 0.0001 0.0003 0 0.0001 0 0 0.0001 0.0004 0.0001 0.0006 0.0004 0.0005 0.0001
Nucleus 0.0186 0.0075 0.0082 0.0059 0.0045 0.0141 0.0413 0.0155 0.0161 0.0289 0.0222 0.0336 0.0175 0.0082 0.0087 0.0129 0.0134 0.0077
Peroxisomes 0.0006 0.0004 0.0003 0.0001 0.0003 0.0001 0.0024 0.0001 0.0018 0.0002 0.0005 0.0009 0.0096 0.0008 0.0005 0.0034 0.072 0.0005
Punctate Nuclear 0.0027 0.0009 0.0012 0.0007 0.0015 0.0021 0.0061 0.0009 0.0017 0.0015 0.0018 0.0024 0.0074 0.0015 0.0016 0.0231 0.0024 0.0035
Vacuole 0.0011 0.0011 0.0019 0.0005 0.0005 0.0011 0.0022 0.0005 0.0006 0.0003 0.001 0.0007 0.001 0.0014 0.0015 0.0018 0.0014 0.0006
Vacuole Periphery 0.0004 0.0001 0.0003 0.0001 0.0001 0.0002 0.0008 0.0001 0.0001 0.0001 0.0002 0.0002 0.0008 0.0003 0.0003 0.0006 0.0024 0.0002

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression – – – – – – – – – –
Translational Efficiency – – – – – – – – – –

Hit Data

Dataset Hit
Protein Concentration ✘
Protein Localization ✘
Gene Expression –
Translational Efficiency –
Standard name
Human Ortholog
Description 6-phosphogluconolactonase; protein abundance increases in response to DNA replication stress; SOL4 has a paralog, SOL3, that arose from the whole genome duplication
Localization
Cell Percentages cytoplasm (42%)
Cell Cycle Regulation No
Subcompartmental Group cytoplasm-9

Sol4

Sol4


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)
Molecular Function (Gene Ontology)
Cellular Component (Gene Ontology)

Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Sol4-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available