Standard name
Human Ortholog
Description Mitochondrial ribosomal protein of the large subunit
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Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.07 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 – – – – – –
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.09 0.06 0.12 0 0 0 0 0 0
Cytoplasm 0 0 0.05 0 0 0 0 0 0 0 0 0 0 0 0 0.09 0.13 0 0 0 0.05 0 0 0
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.11 0.05 0 0 0 0 0 0 0
Golgi 0 0.07 0 0 0 0 0 0 0 0 0 0 0.07 0.06 0.13 0.27 0.35 0.36 0 0.05 0.08 0.05 0.13 0.14
Mitochondria 0.93 0.88 0.92 0.98 0.89 0.86 0.93 0.87 0.94 0.95 0.94 0.93 0.87 0.93 0.84 0.13 0 0.07 0.82 0.82 0.74 0.73 0.63 0.6
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0.07 0.07 0 0 0 0.13 0.18 0.09 0.13 0.09 0.11 0.12 0.07 0.05 0 0 0 0 0 0 0 0 0 0
Nucleolus 0.08 0 0.08 0.05 0.06 0.14 0.1 0.11 0.11 0.13 0.13 0.09 0 0 0 0.06 0.05 0.09 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.11 0.12 0.07 0 0 0 0.05 0.06 0.05
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.06 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0.17 0.15 0.05 0 0.05 0 0 0.06 0 0 0 0 0.12 0.06 0.08 0.19 0.23 0.23 0 0 0 0 0 0.08
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 1 0 0 0 0 0 0 0 0 0 0 2 1 0 0 1 0 2 4 0 2 10 16
Bud 2 3 1 5 6 4 12 4 10 10 3 6 3 4 6 2 2 4 0 0 0 0 2 3
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1
Bud Site 0 0 0 0 0 0 3 5 3 3 2 5 0 0 0 2 0 0 – – – – – –
Cell Periphery 4 12 1 2 2 1 2 3 0 1 0 3 8 9 15 6 5 7 0 0 0 0 1 1
Cytoplasm 1 10 3 0 6 4 5 13 5 4 3 2 10 5 24 6 10 1 0 3 3 1 2 3
Endoplasmic Reticulum 0 1 1 1 0 3 1 1 1 0 4 1 4 3 3 2 2 1 1 0 0 0 1 3
Endosome 2 2 0 0 10 2 2 4 1 0 0 0 5 9 23 8 4 2 6 5 1 4 13 12
Golgi 4 25 0 0 6 0 0 0 0 0 0 0 22 25 72 19 27 20 9 19 6 6 44 55
Mitochondria 207 324 58 147 213 157 309 316 289 256 169 203 274 412 461 9 3 4 186 329 58 96 212 236
Nucleus 0 1 0 0 0 0 2 4 0 2 0 1 1 0 2 3 2 1 0 2 0 0 1 1
Nuclear Periphery 15 25 1 5 9 24 59 33 40 23 20 27 23 21 12 0 1 1 2 4 2 2 4 3
Nucleolus 17 15 5 8 14 26 35 39 34 35 23 19 10 8 7 4 4 5 0 2 1 2 4 1
Peroxisomes 0 4 1 1 9 4 3 9 3 1 0 2 5 17 19 8 9 4 6 8 2 7 19 18
SpindlePole 1 0 0 0 0 2 4 4 4 3 1 1 2 1 3 4 1 1 1 0 0 1 1 1
Vac/Vac Membrane 39 54 3 1 11 5 8 20 11 4 2 3 39 26 44 13 18 13 7 15 0 3 8 29
Unique Cell Count 223 369 63 150 240 182 334 363 306 269 180 218 315 445 546 70 77 56 228 400 79 133 336 396
Labelled Cell Count 292 477 74 170 286 232 445 455 401 342 227 273 408 541 691 86 89 64 228 400 79 133 336 396


Mitochondria

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 9.0 10.9 7.2 8.6 9.4 7.7 7.5 7.9 7.0 7.1 7.0 7.0 9.5 9.5 9.3 10.4 10.5 10.3 9.5 11.0 10.8
Std Deviation (1e-4) 1.9 2.2 1.7 1.9 1.9 1.9 2.3 2.5 2.1 2.1 2.0 2.4 2.1 1.7 1.8 2.9 2.6 3.0 2.4 2.7 2.8
Intensity Change (Log2) – – – 0.25 0.37 0.1 0.05 0.13 -0.05 -0.02 -0.05 -0.04 0.39 0.39 0.36 0.52 0.54 0.51 0.39 0.61 0.58


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm 0 0 0 0 0 0 0 0 0 0 0 0 0 1.7 0
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 0 0 3.1 4.5 5.2 5.2
Mitochondria 2.1 -0.8 -1.2 0.1 -1.1 0.7 1.0 0.5 0.3 -1.1 0.1 -1.6 -9.1 -10.5 -9.3
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 2.6 3.3 2.0 2.6 0 2.3 2.5 0 0 0 0 0 0
Nucleolus 0 0 1.3 0.6 0.7 0.7 1.1 1.0 0.2 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vacuole 0 0 0 0 0 0 0 0 0 1.8 0 0 2.4 3.1 2.9

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration 5.8482 5.5609 5.7722 4.759 4.7677 5.3097 5.3345 5.5864 5.631 5.3779 5.8939 5.5213 7.7387 7.2271 7.2078 7.4536 7.6614 7.2202
Actin 0.0248 0.0027 0.0067 0.0001 0.0002 0.0063 0.0202 0.0117 0.0051 0.0085 0.0022 0.0025 0.012 0.0041 0.0036 0.0027 0.0004 0.0019
Bud 0.0004 0.0007 0.002 0 0 0.0005 0.0004 0.0003 0.0001 0.0001 0 0.0001 0.0006 0.0039 0.0028 0.0022 0 0.0001
Bud Neck 0.0033 0.0002 0.0001 0 0 0.0002 0.0004 0 0.0001 0 0 0.0001 0.0006 0.0002 0.0003 0 0 0.0001
Bud Periphery 0.0006 0.0014 0.0043 0 0.0002 0.0011 0.0006 0.0004 0.0002 0.0001 0.0001 0.0002 0.0025 0.0033 0.0062 0.0196 0.0002 0.0004
Bud Site 0.0024 0.0009 0.0013 0 0 0.0046 0.0044 0.0005 0.0003 0.0003 0 0.0001 0.0026 0.0053 0.002 0.0004 0 0.0003
Cell Periphery 0.0002 0.0003 0.0001 0 0.0001 0.0001 0.0002 0.0001 0.0001 0 0 0.0001 0.0003 0.0004 0.0005 0.0002 0 0.0001
Cytoplasm 0.0005 0.0002 0.0011 0 0 0 0.0026 0 0.0002 0 0 0.0002 0.0044 0.002 0.0034 0.0001 0 0.0003
Cytoplasmic Foci 0.0097 0.002 0.0038 0 0 0.0009 0.0158 0.0013 0.0043 0.0008 0.0008 0.0049 0.0115 0.0115 0.0055 0.0008 0.0001 0.0039
Eisosomes 0.0003 0.0001 0.0001 0.0001 0.0001 0.0001 0.0006 0.0002 0.0002 0.0002 0.0002 0.0002 0.0004 0.0004 0.0002 0.0001 0.0001 0.0001
Endoplasmic Reticulum 0.0004 0.001 0.0004 0 0 0.0001 0.0013 0 0.0003 0 0 0.0003 0.0021 0.001 0.0008 0.0001 0 0.0002
Endosome 0.011 0.009 0.0151 0.0002 0.0001 0.0029 0.0333 0.0092 0.0127 0.0009 0.0069 0.0076 0.0192 0.0186 0.0093 0.0087 0.0002 0.0068
Golgi 0.0262 0.0163 0.0083 0.0003 0.0002 0.0087 0.0308 0.0168 0.0137 0.0023 0.0162 0.0202 0.0223 0.0426 0.0092 0.0101 0.0003 0.0104
Lipid Particles 0.0202 0.0067 0.0063 0.0002 0.0003 0.0045 0.0237 0.0009 0.0041 0.0017 0.0007 0.0075 0.0345 0.0082 0.0051 0.001 0.0004 0.0058
Mitochondria 0.8516 0.9442 0.9329 0.9983 0.998 0.9567 0.8239 0.9525 0.9478 0.982 0.9658 0.9476 0.8038 0.8531 0.8275 0.9488 0.9953 0.948
None 0.0003 0.0001 0.0009 0 0 0 0.0014 0 0.0001 0 0 0.0004 0.0367 0.0151 0.0831 0.0001 0 0.0075
Nuclear Periphery 0.0007 0.0014 0.0006 0 0 0.0001 0.0036 0 0.0004 0 0 0.0013 0.0104 0.0004 0.0032 0.0002 0 0.001
Nucleolus 0.0004 0.0001 0.0005 0 0 0.0001 0.0014 0 0 0 0 0.0001 0.002 0.0003 0.0021 0 0 0.0006
Nucleus 0.0127 0.0002 0.0008 0 0 0 0.0031 0 0.0001 0 0 0.0001 0.0021 0.0003 0.0022 0.0001 0 0.0004
Peroxisomes 0.0228 0.003 0.005 0.0004 0.0006 0.011 0.0158 0.004 0.0077 0.0019 0.0052 0.003 0.0174 0.0256 0.0184 0.0022 0.0026 0.0076
Punctate Nuclear 0.0003 0.0001 0.0015 0 0 0 0.0035 0 0.0002 0 0 0.0005 0.0079 0.0009 0.002 0 0 0.0016
Vacuole 0.0046 0.0036 0.0034 0.0001 0.0001 0.0004 0.0023 0.0006 0.0008 0.0003 0.0003 0.0005 0.0024 0.0011 0.0059 0.0007 0.0001 0.0007
Vacuole Periphery 0.0065 0.0059 0.0048 0.0002 0.0002 0.0016 0.0107 0.0013 0.0016 0.0008 0.0014 0.0026 0.0044 0.0017 0.0065 0.0019 0.0003 0.0021

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 54.3343 22.4176 18.4832 39.8027 18.0633 38.9877 47.8514 54.3941 47.0263 51.8482
Translational Efficiency 1.0903 2.7401 3.0859 1.7649 3.4455 2.5245 1.8191 2.3234 2.1442 2.0493

Hit Data

Dataset Hit
Protein Concentration ✘
Protein Localization ✔
Gene Expression ✘
Translational Efficiency ✘

Micrographs

Cell Count

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
2826 1789 527 1591 2004 1848 1037 1832 4830 3637 1564 3423

Protein Abundance

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Mean 912.44 992.39 1339.56 1235.74 879.30 998.07 1210.24 1217.08 898.69 995.28 1253.82 1225.75
Standard Deviation 138.36 171.83 227.09 196.42 142.26 165.00 184.71 204.12 140.94 168.42 209.13 200.79
Intensity Change Log 2 — 0.121178 0.553958 0.437574 — 0.182786 0.460866 0.468997 — 0.151741 0.509023 0.453080

Localization Score (DeepLoc)

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Actin 0.000291 0.001262 0.009192 0.002746 0.000369 0.001026 0.003161 0.005104 0.000323 0.001142 0.005193 0.004008
Bud Neck 0.000332 0.000811 0.004412 0.001256 0.000375 0.000787 0.004156 0.001480 0.000350 0.000799 0.004242 0.001376
Bud Site 0.000768 0.002320 0.004210 0.006998 0.000588 0.002175 0.005828 0.008167 0.000694 0.002246 0.005283 0.007624
Cell Periphery 0.000089 0.000131 0.000137 0.000286 0.000208 0.000137 0.000133 0.000810 0.000139 0.000134 0.000135 0.000567
Cytoplasm 0.000151 0.000416 0.000624 0.000848 0.000111 0.000580 0.000774 0.000981 0.000134 0.000499 0.000724 0.000919
Cytoplasmic Foci 0.005588 0.013289 0.047313 0.009199 0.005741 0.013694 0.021788 0.007224 0.005652 0.013495 0.030389 0.008142
Eisosomes 0.000029 0.000069 0.000194 0.000092 0.000030 0.000053 0.000090 0.000150 0.000029 0.000061 0.000125 0.000123
Endoplasmic Reticulum 0.000077 0.000139 0.000449 0.000669 0.000133 0.000158 0.000185 0.000351 0.000100 0.000148 0.000274 0.000499
Endosome 0.010260 0.014140 0.019281 0.013435 0.006051 0.017674 0.023434 0.012258 0.008513 0.015936 0.022034 0.012805
Golgi 0.009638 0.023032 0.059712 0.035113 0.007215 0.019100 0.024408 0.031343 0.008632 0.021034 0.036304 0.033095
Lipid Particles 0.003483 0.003301 0.008104 0.002117 0.005069 0.005396 0.004909 0.001551 0.004141 0.004365 0.005985 0.001814
Mitochondria 0.955101* 0.911814* 0.769220* 0.881595* 0.957877* 0.912776* 0.851899* 0.893967* 0.956253* 0.912303* 0.824040* 0.888216*
Mitotic Spindle 0.000541 0.002006 0.018831 0.008360 0.001006 0.001672 0.017649 0.005174 0.000734 0.001837 0.018047 0.006655
None 0.000243 0.000308 0.001095 0.001136 0.000336 0.000265 0.000489 0.000502 0.000282 0.000286 0.000693 0.000796
Nuclear Periphery 0.000142 0.000187 0.002153 0.001139 0.000319 0.000088 0.000991 0.000328 0.000215 0.000137 0.001383 0.000705
Nuclear Periphery Foci 0.000166 0.000337 0.001374 0.000771 0.000145 0.000155 0.000829 0.000238 0.000157 0.000245 0.001013 0.000486
Nucleolus 0.000183 0.000145 0.000506 0.000170 0.000151 0.000491 0.000726 0.000156 0.000170 0.000321 0.000652 0.000162
Nucleus 0.000083 0.000089 0.000182 0.000185 0.000080 0.000179 0.000256 0.000088 0.000082 0.000135 0.000231 0.000133
Peroxisomes 0.007061 0.019730 0.031818 0.003422 0.007395 0.015509 0.019493 0.007379 0.007200 0.017586 0.023646 0.005539
Vacuole 0.002033 0.002697 0.009011 0.011101 0.001775 0.004211 0.010169 0.009986 0.001926 0.003466 0.009779 0.010504
Vacuole Periphery 0.003740 0.003778 0.012182 0.019364 0.005027 0.003873 0.008633 0.012763 0.004274 0.003826 0.009829 0.015831

Localization Changes (T-score)

R1 R2 R1 & R2
UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14
Actin -6.51 -4.89 -4.15 -2.45 3.37 -4.18 -4.78 -5.05 -4.30 -1.76 -7.60 -6.69 -6.44 -4.94 1.28
Bud Neck -2.62 -6.27 -4.86 -1.85 4.71 -2.46 -6.94 -3.84 -2.20 4.45 -3.63 -9.22 -5.79 -2.85 6.37
Bud Site -2.10 -3.37 -4.79 -3.22 -1.72 -2.77 -5.21 -5.62 -4.13 -1.25 -3.31 -6.07 -7.34 -5.22 -1.82
Cell Periphery -1.31 -2.45 -5.83 -3.74 -4.59 0.91 0.97 -2.01 -2.32 -2.34 0.11 0.11 -2.70 -2.77 -2.78
Cytoplasm -3.72 -7.15 -3.97 -2.37 -1.25 -3.58 -5.84 -4.63 -1.68 -0.69 -4.79 -7.31 -6.04 -2.79 -1.05
Cytoplasmic Foci -6.64 -9.70 -3.49 2.92 8.72 -6.01 -8.35 -1.60 4.77 7.49 -8.95 -12.75 -3.65 5.52 11.21
Eisosomes -6.83 -9.71 -8.89 -2.57 5.59 -5.35 -5.97 -2.24 -1.81 -1.09 -8.74 -10.83 -3.25 -2.14 0.09
Endoplasmic Reticulum -3.00 -5.48 -3.56 -3.19 -1.26 -0.80 -2.00 -4.22 -3.72 -3.22 -2.64 -6.30 -4.86 -4.25 -2.62
Endosome -2.54 -4.06 -2.20 0.39 2.47 -7.54 -8.26 -5.03 3.00 4.85 -6.71 -8.40 -4.42 2.50 5.40
Golgi -6.83 -9.83 -8.98 -3.71 4.29 -7.64 -7.56 -9.69 -4.43 -2.16 -9.88 -11.91 -13.01 -5.68 1.10
Lipid Particles 0.22 -3.53 1.97 1.85 4.92 -0.28 0.11 3.83 4.10 2.97 -0.32 -1.93 4.20 4.47 4.89
Mitochondria 7.73 13.43 11.22 3.89 -7.53 8.14 12.25 10.63 2.68 -4.40 11.19 17.86 15.43 4.62 -7.87
Mitotic Spindle -3.54 -5.12 -5.65 -4.43 2.73 -1.75 -6.57 -4.94 -4.11 4.72 -4.03 -8.39 -7.57 -5.96 5.19
None -2.71 -9.96 -2.18 -2.03 -0.12 1.52 -3.47 -3.61 -5.58 -0.34 -0.22 -10.80 -2.69 -2.66 -0.55
Nuclear Periphery -0.39 -3.84 -3.70 -3.30 1.73 1.44 -2.67 -0.06 -5.46 3.31 0.89 -5.09 -3.40 -4.14 2.69
Nuclear Periphery Foci -0.88 -4.56 -3.30 -1.72 1.88 -0.37 -4.86 -2.32 -1.96 4.18 -0.91 -6.53 -3.67 -1.94 3.45
Nucleolus 0.26 -1.45 0.09 -0.46 1.88 -1.80 -2.73 -0.08 1.80 2.74 -1.22 -2.85 0.07 1.61 3.26
Nucleus -0.09 -1.27 -0.94 -1.03 -0.03 -1.43 -2.24 -0.21 1.41 2.23 -1.08 -2.39 -0.89 0.04 1.52
Peroxisomes -5.39 -5.11 3.63 7.27 5.92 -4.29 -5.07 0.00 4.38 5.13 -6.94 -7.32 1.84 8.25 8.13
Vacuole -1.55 -5.93 -9.05 -8.18 -1.41 -3.97 -7.74 -8.15 -5.10 0.14 -4.06 -9.55 -12.01 -9.16 -0.67
Vacuole Periphery -0.06 -5.16 -9.50 -8.98 -3.17 1.27 -3.00 -5.84 -7.75 -2.97 0.82 -6.22 -11.37 -11.79 -4.85
Standard name
Human Ortholog
Description Mitochondrial ribosomal protein of the large subunit
Localization
Cell Percentages mitochondrion (99%)
Cell Cycle Regulation No
Subcompartmental Group mito-2

Mrpl31

Mrpl31


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)
Molecular Function (Gene Ontology)
Cellular Component (Gene Ontology)

Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Mrpl31-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available