Standard name | |
---|---|
Human Ortholog | |
Description | cAMP-dependent protein kinase catalytic subunit; promotes vegetative growth in response to nutrients via the Ras-cAMP signaling pathway; partially redundant with Tpk1p and Tpk2p; localizes to P-bodies during stationary phase; TPK3 has a paralog, TPK1, that arose from the whole genome duplication |
ensLOC | DeepLoc | |||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 2 | 2 |
Bud | 0 | 0 | 0 | 1 | 0 | 7 | 6 | 17 | 9 | 8 | 5 | 14 | 0 | 0 | 0 | 0 | 0 | 0 | 6 | 15 | 2 | 10 | 17 | 30 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 4 | 1 | 1 | 1 | 6 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 3 | 0 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 0 | 0 | 0 | 0 | 1 | 1 | 1 | 1 | 4 | 3 | 2 | 2 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 54 | 156 | 122 | 60 | 118 | 180 | 238 | 218 | 215 | 196 | 179 | 226 | 105 | 142 | 155 | 61 | 30 | 25 | 31 | 122 | 130 | 127 | 152 | 125 |
Endoplasmic Reticulum | 1 | 3 | 2 | 0 | 0 | 1 | 0 | 3 | 0 | 0 | 1 | 1 | 2 | 2 | 3 | 1 | 4 | 2 | 1 | 1 | 2 | 2 | 3 | 6 |
Endosome | 0 | 8 | 49 | 29 | 25 | 12 | 14 | 16 | 8 | 6 | 1 | 5 | 11 | 15 | 11 | 7 | 2 | 3 | 3 | 17 | 37 | 10 | 19 | 42 |
Golgi | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 2 | 0 | 1 | 2 | 2 | 8 | 11 |
Mitochondria | 0 | 3 | 12 | 16 | 51 | 123 | 236 | 301 | 230 | 210 | 218 | 304 | 1 | 1 | 0 | 4 | 2 | 2 | 0 | 1 | 2 | 3 | 6 | 11 |
Nucleus | 39 | 119 | 46 | 77 | 26 | 27 | 37 | 37 | 28 | 25 | 33 | 29 | 128 | 181 | 159 | 19 | 5 | 5 | 83 | 241 | 134 | 98 | 112 | 137 |
Nuclear Periphery | 0 | 1 | 3 | 0 | 0 | 0 | 2 | 2 | 4 | 2 | 9 | 2 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 2 | 3 | 1 | 0 | 2 |
Nucleolus | 1 | 1 | 13 | 4 | 4 | 6 | 9 | 13 | 7 | 3 | 2 | 1 | 2 | 0 | 1 | 0 | 1 | 0 | 0 | 4 | 2 | 1 | 2 | 3 |
Peroxisomes | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 3 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 4 | 5 | 1 | 0 | 1 | 4 | 3 | 1 | 1 | 3 | 0 | 1 | 1 | 0 | 1 | 1 | 2 | 16 | 16 | 7 | 12 | 24 |
Vac/Vac Membrane | 62 | 241 | 161 | 111 | 121 | 112 | 116 | 128 | 81 | 100 | 50 | 51 | 190 | 157 | 164 | 46 | 34 | 38 | 8 | 45 | 33 | 49 | 96 | 89 |
Unique Cell Count | 124 | 433 | 328 | 255 | 283 | 379 | 515 | 586 | 456 | 443 | 397 | 508 | 378 | 456 | 444 | 122 | 67 | 66 | 139 | 484 | 375 | 322 | 444 | 503 |
Labelled Cell Count | 157 | 533 | 413 | 303 | 348 | 469 | 661 | 744 | 593 | 554 | 503 | 640 | 440 | 500 | 496 | 138 | 79 | 79 | 139 | 484 | 375 | 322 | 444 | 503 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 8.3 | 7.4 | 6.5 | 6.5 | 5.7 | 5.2 | 4.3 | 4.5 | 4.4 | 4.2 | 4.2 | 4.2 | 8.4 | 7.5 | 7.8 | 8.2 | 7.8 | 9.0 | 9.0 | 8.9 | 8.6 |
Std Deviation (1e-4) | 1.5 | 1.2 | 1.3 | 1.3 | 2.1 | 1.7 | 1.6 | 1.6 | 1.6 | 1.6 | 1.2 | 1.2 | 1.2 | 1.2 | 1.3 | 1.7 | 1.3 | 2.6 | 1.3 | 1.4 | 1.3 |
Intensity Change (Log2) | – | – | – | -0.01 | -0.19 | -0.33 | -0.6 | -0.55 | -0.57 | -0.62 | -0.65 | -0.65 | 0.36 | 0.21 | 0.26 | 0.33 | 0.26 | 0.46 | 0.47 | 0.44 | 0.4 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | -3.5 | 1.1 | 2.8 | 2.6 | 0 | 2.8 | 2.0 | 2.1 | 2.1 | -2.7 | -1.8 | -0.7 | 2.5 | 1.2 | 0.1 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Endosome | -1.3 | -2.3 | -5.6 | 0 | 0 | 0 | 0 | 0 | 0 | -5.7 | -5.9 | -6.4 | -2.6 | -2.7 | -2.3 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 1.5 | 5.8 | 9.7 | 0 | 0 | 0 | 0 | 0 | 0 | -3.3 | -3.7 | -4.1 | 0 | 0 | 0 |
Nucleus | 4.7 | -1.8 | -3.0 | -3.2 | -3.9 | -3.7 | -4.0 | -2.5 | -4.1 | 6.1 | 7.8 | 6.8 | 0.4 | -1.5 | -1.4 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | -1.7 | -1.9 | -2.0 | 0 | 0 | 0 | 0 | 0 | 0 | -3.2 | -4.3 | -3.8 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vacuole | -1.3 | -1.6 | -5.3 | -8.0 | -8.5 | -9.4 | -7.7 | -10.8 | -12.7 | 0.3 | -4.1 | -3.4 | -2.2 | 0.2 | 1.3 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 3.6118 | 4.7144 | 4.1889 | 3.9065 | 3.6153 | 4.2364 | 6.5343 | 7.9964 | 7.0618 | 6.6622 | 6.3267 | 7.1669 | 2.9078 | 3.2923 | 2.6225 | 3.3011 | 2.4054 | 2.8259 |
Actin | 0.0017 | 0.0003 | 0.0014 | 0.0011 | 0 | 0.0028 | 0.0208 | 0.0001 | 0.006 | 0.0075 | 0.0135 | 0.0021 | 0.0062 | 0.0068 | 0.0107 | 0.0045 | 0.0066 | 0.0044 |
Bud | 0.0003 | 0.0004 | 0.0004 | 0.0001 | 0 | 0.0003 | 0.0006 | 0.0001 | 0.0003 | 0.0015 | 0.0002 | 0.0003 | 0.0016 | 0.0015 | 0.0015 | 0.0005 | 0.001 | 0.0011 |
Bud Neck | 0.0013 | 0.0007 | 0.001 | 0.0012 | 0.0004 | 0.0022 | 0.0077 | 0.0004 | 0.0006 | 0.0217 | 0.0009 | 0.0021 | 0.0032 | 0.0025 | 0.0043 | 0.0013 | 0.0021 | 0.0063 |
Bud Periphery | 0.0004 | 0.0003 | 0.0006 | 0.0001 | 0 | 0.0002 | 0.0008 | 0 | 0.0006 | 0.0017 | 0.0004 | 0.0004 | 0.0013 | 0.0013 | 0.0015 | 0.0005 | 0.0013 | 0.001 |
Bud Site | 0.0012 | 0.0024 | 0.0015 | 0.0004 | 0.0001 | 0.0004 | 0.0027 | 0.0003 | 0.0013 | 0.0303 | 0.0003 | 0.0002 | 0.0055 | 0.0071 | 0.0061 | 0.0013 | 0.0018 | 0.0022 |
Cell Periphery | 0.0001 | 0.0002 | 0.0001 | 0.0001 | 0 | 0 | 0.0005 | 0 | 0.0001 | 0.0013 | 0 | 0 | 0.0001 | 0.0001 | 0.0001 | 0 | 0.0001 | 0.0001 |
Cytoplasm | 0.0627 | 0.082 | 0.0681 | 0.0344 | 0.0179 | 0.0545 | 0.1319 | 0.1584 | 0.0744 | 0.0384 | 0.0793 | 0.0818 | 0.0164 | 0.0381 | 0.0121 | 0.0131 | 0.0121 | 0.0202 |
Cytoplasmic Foci | 0.0205 | 0.0007 | 0.0086 | 0.0047 | 0.0003 | 0.0047 | 0.0074 | 0.0008 | 0.0018 | 0.004 | 0.0081 | 0.0007 | 0.0666 | 0.0804 | 0.0618 | 0.0316 | 0.0601 | 0.0517 |
Eisosomes | 0.0001 | 0 | 0 | 0 | 0 | 0 | 0.0001 | 0 | 0.0001 | 0.0004 | 0.0002 | 0 | 0 | 0.0002 | 0 | 0 | 0.0001 | 0 |
Endoplasmic Reticulum | 0.0041 | 0.0009 | 0.0013 | 0.0034 | 0.0005 | 0.001 | 0.0066 | 0.0007 | 0.0034 | 0.0021 | 0.0016 | 0.0021 | 0.0006 | 0.0012 | 0.0005 | 0.0002 | 0.0002 | 0.0006 |
Endosome | 0.0475 | 0.001 | 0.0086 | 0.0029 | 0.002 | 0.0071 | 0.0126 | 0.0015 | 0.004 | 0.009 | 0.0085 | 0.0033 | 0.0178 | 0.0124 | 0.0081 | 0.0079 | 0.0157 | 0.0086 |
Golgi | 0.0066 | 0.0001 | 0.0048 | 0.0023 | 0 | 0.0048 | 0.0029 | 0.0001 | 0.0007 | 0.0053 | 0.004 | 0.0003 | 0.0122 | 0.0084 | 0.0083 | 0.0058 | 0.0115 | 0.0065 |
Lipid Particles | 0.0182 | 0.0003 | 0.0044 | 0.0082 | 0.0001 | 0.0081 | 0.0082 | 0 | 0.0019 | 0.0043 | 0.0272 | 0.0003 | 0.0331 | 0.0186 | 0.0151 | 0.0041 | 0.0329 | 0.0259 |
Mitochondria | 0.0116 | 0.0058 | 0.0209 | 0.0007 | 0.0002 | 0.005 | 0.0021 | 0.0002 | 0.0014 | 0.0189 | 0.0026 | 0.0014 | 0.0093 | 0.0052 | 0.0085 | 0.0277 | 0.0094 | 0.0054 |
None | 0.0217 | 0.0025 | 0.0015 | 0.0012 | 0.0055 | 0.0096 | 0.0032 | 0.0005 | 0.0048 | 0.0163 | 0.0049 | 0.002 | 0.0036 | 0.0106 | 0.0026 | 0.0023 | 0.0057 | 0.0012 |
Nuclear Periphery | 0.0263 | 0.0106 | 0.0112 | 0.0074 | 0.0139 | 0.009 | 0.0235 | 0.0079 | 0.0102 | 0.0068 | 0.0128 | 0.0155 | 0.0042 | 0.0037 | 0.0023 | 0.0022 | 0.0013 | 0.0035 |
Nucleolus | 0.0022 | 0.0017 | 0.0017 | 0.0019 | 0.0025 | 0.0025 | 0.0049 | 0.0008 | 0.0014 | 0.0037 | 0.0013 | 0.002 | 0.0046 | 0.0017 | 0.0044 | 0.0042 | 0.0078 | 0.0031 |
Nucleus | 0.7427 | 0.8761 | 0.8483 | 0.8979 | 0.9493 | 0.8719 | 0.7388 | 0.8247 | 0.8778 | 0.8122 | 0.8116 | 0.8777 | 0.1593 | 0.148 | 0.1468 | 0.2408 | 0.1399 | 0.1677 |
Peroxisomes | 0.0114 | 0.0002 | 0.0046 | 0.0268 | 0 | 0.0031 | 0.0108 | 0 | 0.0006 | 0.0031 | 0.0142 | 0.0002 | 0.6283 | 0.6231 | 0.6796 | 0.6349 | 0.678 | 0.6664 |
Punctate Nuclear | 0.0087 | 0.0122 | 0.0074 | 0.003 | 0.0059 | 0.0114 | 0.0097 | 0.0024 | 0.0067 | 0.0079 | 0.007 | 0.0061 | 0.0238 | 0.0279 | 0.0246 | 0.0154 | 0.0117 | 0.0231 |
Vacuole | 0.0075 | 0.0015 | 0.0028 | 0.002 | 0.001 | 0.001 | 0.0032 | 0.001 | 0.0015 | 0.0025 | 0.0007 | 0.001 | 0.0018 | 0.0008 | 0.0009 | 0.0012 | 0.0005 | 0.0009 |
Vacuole Periphery | 0.0031 | 0.0003 | 0.0007 | 0.0002 | 0.0003 | 0.0004 | 0.0008 | 0.0001 | 0.0004 | 0.0012 | 0.0006 | 0.0004 | 0.0005 | 0.0003 | 0.0002 | 0.0004 | 0.0002 | 0.0003 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 11.9835 | 23.8972 | 11.618 | 20.8697 | 20.3178 | 13.8195 | 18.1218 | 20.2444 | 13.356 | 21.2694 |
Translational Efficiency | 2.3537 | 1.1305 | 1.9766 | 1.0888 | 1.1337 | 1.8254 | 1.3999 | 1.249 | 1.7238 | 1.2655 |
Dataset | Hit |
---|---|
Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
---|
Gene | Images |
---|
Gene | Images |
---|