Standard name
Human Ortholog
Description Vacuolar Fe2+/Mn2+ transporter; suppresses respiratory deficit of yfh1 mutants, which lack the ortholog of mammalian frataxin, by preventing mitochondrial iron accumulation; relative distribution to the vacuole decreases upon DNA replication stress
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Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 – – – – – –
Cell Periphery 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm 0.78 0.9 0.87 0.96 0.91 0.93 0.95 0.9 – 0.93 0.91 0.89 0.94 0.98 0.99 0.9 0.88 0.92 0.2 0.45 0.33 0.25 0.26 0.23
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0.06 0 0 0 0 0 0
Endosome 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0.08 0 0.14 0 0.05 0.09 0.12 0.13 – 0.12 0.14 0.17 0 0 0 0 0 0 0.05 0 0 0 0 0.06
Nucleus 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0.13 0.08 0 0.08 0.14 0 0 0 – 0 0.05 0 0.08 0 0 0.12 0.14 0.13 0.6 0.45 0.57 0.69 0.64 0.65
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1
Bud 0 0 0 1 3 7 12 12 – 9 6 15 0 0 0 0 1 0 0 0 0 0 4 2
Bud Neck 0 0 0 0 0 2 1 3 – 1 3 1 5 0 2 1 0 0 0 0 0 0 0 2
Bud Site 0 0 0 0 0 0 0 0 – 0 2 1 0 0 0 0 0 0 – – – – – –
Cell Periphery 0 2 0 1 1 1 0 1 – 0 0 2 0 0 2 1 1 0 0 0 0 0 0 0
Cytoplasm 87 131 116 332 517 578 757 691 – 579 501 699 246 415 604 238 173 166 27 66 46 24 66 72
Endoplasmic Reticulum 3 2 1 0 0 1 2 0 – 1 0 0 0 1 0 10 8 11 2 1 2 0 2 2
Endosome 0 1 0 0 0 3 3 3 – 3 0 3 0 1 0 1 1 0 1 2 1 0 1 2
Golgi 1 0 0 0 0 0 0 0 – 0 0 0 0 0 0 2 0 1 2 0 0 0 0 2
Mitochondria 9 1 19 7 31 55 97 98 – 72 74 134 0 0 0 9 3 1 7 4 3 3 7 18
Nucleus 4 0 0 1 2 6 0 14 – 6 3 7 1 0 2 0 1 1 2 0 0 1 0 1
Nuclear Periphery 0 0 1 2 0 1 8 6 – 5 0 1 0 0 0 0 1 0 1 0 0 0 0 0
Nucleolus 1 0 0 0 0 1 0 1 – 2 6 2 0 0 0 0 0 0 0 0 0 0 0 1
Peroxisomes 0 0 0 0 0 0 2 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 2 1 2 3 – 3 4 7 0 0 0 0 0 0 2 0 0 0 1 1
Vac/Vac Membrane 14 12 5 29 80 19 15 13 – 17 30 31 20 9 7 31 28 23 81 65 80 68 162 205
Unique Cell Count 111 145 134 346 567 619 795 766 621 548 786 263 422 609 264 197 181 134 148 142 99 255 316
Labelled Cell Count 119 149 142 373 636 675 899 845 698 629 903 272 426 617 293 217 203 134 148 142 99 255 316


Vacuole

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 4.1 4.7 3.6 4.1 3.9 3.6 3.2 3.4 – 3.1 3.3 3.0 5.0 5.0 4.9 5.3 5.4 5.7 5.3 5.7 5.5
Std Deviation (1e-4) 0.8 1.4 1.2 4.7 1.5 1.4 1.5 1.5 – 1.2 1.5 0.9 0.8 1.4 1.6 1.4 1.0 1.5 0.8 2.5 1.6
Intensity Change (Log2) – – – 0.21 0.12 0.01 -0.17 -0.06 – -0.2 -0.1 -0.26 0.49 0.49 0.46 0.56 0.59 0.66 0.56 0.67 0.62


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Actin – – – – – – – – – – – – – – –
Bud – – – – – – – – – – – – 0 0 0
Bud Neck – – – – – – – – – – – – 0 0 0
Bud Site – – – – – – – – – – – – 0 0 0
Cell Periphery – – – – – – – – – – – – 0 0 0
Cyto – – – – – – – – – – – – – – –
Endoplasmic Reticulum – – – – – – – – – – – – 0 0 0
Endosome – – – – – – – – – – – – 0 0 0
Golgi – – – – – – – – – – – – 0 0 0
Mitochondria – – – – – – – – – – – – 0 0 0
Nuclear Periphery – – – – – – – – – – – – 0 0 0
Nuc – – – – – – – – – – – – – – –
Nucleolus – – – – – – – – – – – – 0 0 0
Peroxisomes – – – – – – – – – – – – 0 0 0
SpindlePole – – – – – – – – – – – – 0 0 0
Vac – – – – – – – – – – – – – – –
Cortical Patches – – – – – – – – – – – – 0 0 0
Cytoplasm – – – – – – – – – – – – 0 0 0
Nucleus – – – – – – – – – – – – 0 0 0
Vacuole – – – – – – – – – – – – 2.6 3.1 2.8

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration -0.2252 0.4011 0.1801 -0.2521 1.0011 0.421 0.8672 1.7489 1.6086 1.4848 1.0895 1.6107 -0.7168 0.3335 -0.2858 0.1431 -0.5865 -0.0072
Actin 0.0247 0.0001 0.0017 0.02 0.0013 0.0026 0.0166 0 0.0142 0.0001 0.0009 0.0001 0.0027 0.0001 0.0001 0 0 0
Bud 0.0005 0.0074 0.0011 0.0007 0.0004 0.0062 0.0008 0.0013 0.001 0.0007 0.0004 0.0005 0.0003 0.0007 0.003 0.0005 0.0003 0.0003
Bud Neck 0.0033 0.0021 0.0033 0.0005 0.0011 0.0034 0.0018 0.0012 0.0015 0.0014 0.0009 0.0017 0.0025 0.0007 0.0011 0.0003 0.0006 0.0012
Bud Periphery 0.0008 0.0026 0.0021 0.001 0.0007 0.0024 0.0037 0.0038 0.0026 0.0016 0.0007 0.0015 0.0005 0.0016 0.0031 0.0008 0.0003 0.001
Bud Site 0.0109 0.0244 0.0105 0.0021 0.0008 0.0017 0.0024 0.0017 0.0061 0.0016 0.0009 0.0007 0.0029 0.0017 0.004 0.0003 0.0013 0.0004
Cell Periphery 0.0013 0.001 0.0008 0.0002 0.0003 0.0008 0.0017 0.0019 0.0023 0.0009 0.0014 0.0017 0.0012 0.001 0.0008 0.0005 0.0005 0.0011
Cytoplasm 0.106 0.1556 0.1194 0.1334 0.0705 0.1232 0.0522 0.0327 0.0346 0.014 0.0408 0.0336 0.0677 0.0827 0.1084 0.0592 0.0852 0.0313
Cytoplasmic Foci 0.0673 0.0458 0.0591 0.0554 0.0753 0.0882 0.0323 0.0212 0.0267 0.0277 0.0273 0.0146 0.0224 0.0161 0.0212 0.0307 0.0153 0.0136
Eisosomes 0.0007 0.0001 0.0002 0.0001 0.0001 0.0001 0.0003 0.0001 0.0006 0 0 0 0.0004 0 0 0 0 0
Endoplasmic Reticulum 0.0082 0.0069 0.004 0.0013 0.0065 0.0034 0.0064 0.0082 0.0053 0.0021 0.0018 0.0033 0.0083 0.0113 0.0051 0.0021 0.002 0.0039
Endosome 0.218 0.1778 0.228 0.2746 0.2568 0.2133 0.2311 0.1544 0.2226 0.3027 0.2487 0.1793 0.2296 0.1545 0.1988 0.2492 0.147 0.1746
Golgi 0.0109 0.0031 0.0078 0.0141 0.0159 0.0064 0.0154 0.0033 0.0092 0.0085 0.0073 0.0046 0.0037 0.0019 0.0034 0.0016 0.0015 0.002
Lipid Particles 0.0266 0.0094 0.0241 0.043 0.0748 0.0319 0.0141 0.0108 0.0175 0.0129 0.0039 0.009 0.0193 0.0056 0.0054 0.0018 0.0022 0.0049
Mitochondria 0.015 0.0093 0.008 0.0245 0.0142 0.0052 0.0217 0.0098 0.0357 0.0335 0.0296 0.0056 0.0045 0.003 0.0199 0.0017 0.0006 0.0015
None 0.2652 0.2463 0.2292 0.1056 0.0709 0.125 0.1088 0.0683 0.0741 0.022 0.0666 0.0302 0.1526 0.0924 0.0846 0.0619 0.1211 0.0351
Nuclear Periphery 0.0077 0.0057 0.0064 0.002 0.039 0.0186 0.0115 0.0162 0.0063 0.0031 0.0025 0.009 0.0132 0.0228 0.0058 0.0036 0.0039 0.006
Nucleolus 0.0026 0.002 0.0033 0.0008 0.003 0.0038 0.0036 0.0027 0.0041 0.0057 0.0019 0.0024 0.0028 0.0018 0.0015 0.0009 0.001 0.0013
Nucleus 0.005 0.0076 0.0079 0.002 0.0257 0.0102 0.0119 0.0077 0.0082 0.0061 0.0041 0.0107 0.0052 0.0073 0.0047 0.0032 0.017 0.0049
Peroxisomes 0.0139 0.0007 0.0105 0.0332 0.0417 0.0072 0.0024 0.003 0.0041 0.0028 0.0007 0.0022 0.0017 0.0003 0.0008 0.0004 0.0003 0.0009
Punctate Nuclear 0.0061 0.0012 0.002 0.001 0.0049 0.005 0.0035 0.0005 0.0008 0.0018 0.0006 0.0003 0.0027 0.0005 0.0005 0.0008 0.0003 0.0004
Vacuole 0.1837 0.2702 0.2373 0.2385 0.2625 0.3133 0.4065 0.5663 0.4376 0.4814 0.5084 0.6094 0.3957 0.5287 0.4606 0.4739 0.5453 0.6239
Vacuole Periphery 0.0213 0.0206 0.0334 0.046 0.0337 0.0282 0.0512 0.0848 0.0848 0.0695 0.0505 0.0795 0.0601 0.0652 0.0671 0.1064 0.0543 0.0918

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 18.2193 21.3766 31.7247 29.9746 38.3859 26.1757 19.0408 27.7864 30.8216 24.8211
Translational Efficiency 2.6004 1.6436 1.2294 1.9689 1.568 1.7296 1.9164 1.5894 1.6749 1.8858

Hit Data

Dataset Hit
Protein Concentration ✘
Protein Localization ✘
Gene Expression ✘
Translational Efficiency ✘
Standard name
Human Ortholog
Description Vacuolar Fe2+/Mn2+ transporter; suppresses respiratory deficit of yfh1 mutants, which lack the ortholog of mammalian frataxin, by preventing mitochondrial iron accumulation; relative distribution to the vacuole decreases upon DNA replication stress
Localization
Cell Percentages cytoplasm (21%), vacuole (4%), mixed (43%)
Cell Cycle Regulation No
Subcompartmental Group N/A

Ccc1

Ccc1


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)
Molecular Function (Gene Ontology)
Cellular Component (Gene Ontology)

Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Ccc1-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available