Standard name
Human Ortholog
Description Dehydrogenase involved in ubiquinone and sphingolipid metabolism; oxidizes 4-hydroxybenzaldehyde into 4-hydroxybenzoic acid in ubiquinone biosynthesis; converts hexadecenal to hexadecenoic acid in sphingosine 1-phosphate breakdown pathway; located in the mitochondrial outer membrane and also in lipid particles; human homolog ALDH3A2, a fatty aldehyde dehydrogenase (FALDH) mutated in neurocutaneous disorder Sjogren-Larsson syndrome, can complement yeast hfd1 mutant

Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0.06 0 0 0.06 0 0 0.05 0.05 0.05 0 0 0.08 0 0 0 0 0.05 0.06 0.13 0.13 0.1 0.12
Bud 0 0 0.06 0.05 0.05 0 0.05 0 0.05 0 0.05 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0 0 0.06 0 0 0 0 0 0 0 0.07 0.07 0 0 0 0 0 0 0 0 0 0
Cytoplasm 0.83 0.77 0.65 0.61 0.46 0.33 0.2 0.22 0.1 0.12 0.12 0.14 0.62 0.52 0.55 0.3 0.26 0.3 0.25 0.36 0.17 0.45 0.28 0.25
Endoplasmic Reticulum 0 0.07 0.15 0.09 0.16 0.36 0.16 0.09 0.2 0.22 0.15 0.08 0.31 0.27 0 0.05 0.07 0.08 0.31 0.14 0.18 0.11 0.13 0.07
Endosome 0.07 0.08 0.06 0.13 0.21 0.07 0.25 0.21 0.05 0 0.06 0 0.1 0.2 0.4 0.4 0.42 0.38 0.07 0.11 0.14 0 0.15 0.16
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0.18 0 0.06 0.2 0.14 0.39 0.43 0.47 0.72 0.74 0.7 0.8 0 0 0 0.08 0 0.05 0.17 0.12 0.23 0.09 0.13 0.14
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0 0.06 0 0 0 0.06 0.1 0.08 0 0 0 0 0 0
Peroxisomes 0 0 0 0.05 0 0 0 0 0 0 0 0 0 0 0.17 0.07 0.05 0 0 0 0 0 0 0
SpindlePole 0 0 0.07 0.06 0 0 0 0.05 0 0 0 0 0 0 0.06 0.27 0.31 0.23 0 0 0 0 0 0
Vac/Vac Membrane 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.12 0.1 0.17 0.06 0.08 0 0.05 0 0.08
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 2 9 1 11 20 9 16 17 26 11 8 3 6 0 2 1 0 7 10 25 6 12 12
Bud 1 1 9 10 14 8 22 16 17 19 10 7 0 1 0 1 1 0 2 3 0 0 1 2
Bud Neck 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 2 5 4 0 2 3
Bud Site 0 0 0 0 0 0 2 3 4 2 3 2 0 0 0 0 0 0
Cell Periphery 3 0 4 6 18 11 13 6 5 8 0 5 5 5 3 0 0 0 0 3 3 1 1 0
Cytoplasm 112 104 106 130 136 101 94 106 33 57 25 50 45 39 42 51 27 19 34 60 35 21 34 24
Endoplasmic Reticulum 0 9 24 20 47 111 75 42 67 107 32 28 22 20 1 8 7 5 44 23 37 5 15 7
Endosome 9 11 9 27 62 21 118 100 17 5 13 3 7 15 31 69 44 24 9 17 28 1 18 15
Golgi 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 2 0 2 0 4 2
Mitochondria 24 3 9 42 40 121 206 222 244 355 146 279 0 2 0 13 3 3 24 19 46 4 16 13
Nucleus 0 0 0 0 0 1 1 2 2 3 0 4 0 0 0 1 1 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 2 3 11 1 3 0 0 0 0 0 0 0 0 1 0 0 0
Nucleolus 1 0 0 2 1 1 4 9 3 8 3 21 0 0 0 11 10 5 0 0 0 1 1 0
Peroxisomes 5 0 0 10 7 4 13 10 4 2 2 1 0 0 13 12 5 1 0 0 4 0 1 1
SpindlePole 3 3 11 12 5 7 18 26 7 5 6 2 3 3 5 46 33 15 1 5 4 0 4 3
Vac/Vac Membrane 1 3 1 3 9 1 16 20 6 5 7 6 0 1 1 21 11 11 8 12 5 2 4 8
Unique Cell Count 135 135 163 212 295 309 480 474 339 481 208 349 72 75 77 172 105 64 142 167 206 48 124 98
Labelled Cell Count 159 137 183 264 350 407 591 580 429 613 259 420 85 92 97 235 143 84 142 167 206 48 124 98


Endosome, Lipid Particles

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 4.3 5.0 4.7 4.8 5.8 5.5 5.4 5.9 5.6 5.5 5.7 5.5 6.1 5.6 5.8 7.3 8.0 8.9 5.7 6.5
Std Deviation (1e-4) 0.9 0.7 1.0 1.2 1.4 1.1 1.1 1.7 1.1 1.2 1.3 1.4 1.1 1.2 1.8 2.3 2.0 2.8 2.8 1.9
Intensity Change (Log2) 0.03 0.29 0.22 0.18 0.31 0.23 0.21 0.25 0.21 0.36 0.25 0.3 0.61 0.75 0.91 0.28 0.46


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Cortical Patches 0 -0.9 0.4 0 -1.2 -0.2 -0.1 -0.1 -1.9 0 0 0 -2.2 0 0
Bud 0 -0.4 -1.6 -0.5 -1.2 -0.2 -0.9 -0.3 -2.1 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 1.7 0.7 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm -0.7 -3.9 -6.7 -10.8 -10.0 -13.0 -13.5 -10.6 -11.6 -0.4 -1.9 -1.6 -6.5 -6.3 -4.8
Endoplasmic Reticulum 0 0.3 4.8 0.3 -2.1 1.4 2.1 0.2 -2.3 2.8 2.2 -3.2 -3.1 -2.0 -1.4
Endosome 0 4.4 0.5 5.3 4.6 -0.2 0 0.3 0 0 3.4 6.7 7.5 7.3 6.2
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0 2.7 7.8 8.7 9.5 13.9 15.2 12.5 15.8 0 0 0 0.8 0 0
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 3.2 0 0 0 3.3 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 3.4 0 0
SpindlePole 0 -2.8 -2.4 -1.6 -0.6 -2.6 0 -1.8 0 0 0 -0.1 4.9 5.3 3.6
Vacuole 0 0 0 0 2.2 0 0 0 0 0 0 0 4.3 0 0

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration 0.9976 3.2482 2.435 1.6602 1.9816 2.2265 2.3133 3.3624 2.8328 2.6318 2.9884 2.7064 4.2654 5.26 4.704 4.5281 4.9096 4.5137
Actin 0.0945 0.0172 0.0488 0.0181 0.0413 0.0177 0.0612 0.002 0.0545 0.0017 0.0746 0.0312 0.0761 0.0096 0.0292 0.0347 0.1446 0.0042
Bud 0.0003 0.0001 0.0001 0.0003 0.0003 0 0.0017 0.0005 0.0008 0 0.0005 0.0002 0.0006 0.0004 0.0021 0.0005 0.0002 0.0001
Bud Neck 0.0099 0.0014 0.0017 0.0029 0.0046 0.0148 0.0091 0.0023 0.0191 0.0006 0.0023 0.0046 0.0023 0.02 0.0019 0.0077 0.0006 0.005
Bud Periphery 0.0006 0.0002 0.0003 0.0017 0.001 0.0001 0.0053 0.0006 0.0017 0.0008 0.0013 0.0008 0.0011 0.0005 0.0032 0.0011 0.0004 0.0001
Bud Site 0.0116 0.0143 0.0018 0.0008 0.0026 0.0003 0.0225 0.0455 0.0539 0.0005 0.002 0.0008 0.0035 0.0295 0.0079 0.003 0.0005 0.0004
Cell Periphery 0.0145 0.0072 0.0094 0.0172 0.0022 0.0062 0.0257 0.0087 0.0282 0.0602 0.0263 0.0123 0.0225 0.0155 0.0124 0.0117 0.0009 0.0039
Cytoplasm 0.1338 0.1266 0.0821 0.1252 0.0929 0.1158 0.1406 0.122 0.2397 0.1512 0.1696 0.1819 0.211 0.132 0.2162 0.1437 0.0648 0.1204
Cytoplasmic Foci 0.1864 0.2514 0.3076 0.1641 0.3004 0.232 0.148 0.2185 0.1494 0.1959 0.1274 0.1556 0.1212 0.1774 0.1854 0.2608 0.1654 0.2509
Eisosomes 0.0021 0.0001 0.0004 0.001 0.0008 0.0001 0.0021 0.0003 0.0011 0.0003 0.0031 0.0006 0.0019 0.0002 0.0002 0.0004 0.0005 0.0001
Endoplasmic Reticulum 0.0414 0.0097 0.0063 0.0124 0.0168 0.0499 0.0143 0.0125 0.0376 0.0503 0.0337 0.0399 0.0462 0.029 0.0367 0.0135 0.0373 0.0255
Endosome 0.0522 0.0224 0.0479 0.0506 0.0472 0.0318 0.0746 0.0737 0.0362 0.0508 0.0562 0.0427 0.1269 0.0683 0.0614 0.0748 0.0345 0.0377
Golgi 0.0155 0.008 0.0147 0.0329 0.0319 0.0107 0.0183 0.0095 0.017 0.0133 0.0271 0.0094 0.0282 0.0142 0.0273 0.0172 0.0184 0.0108
Lipid Particles 0.3352 0.445 0.4116 0.4132 0.3279 0.4656 0.3194 0.4446 0.2319 0.2947 0.2784 0.4234 0.268 0.3637 0.358 0.3808 0.4339 0.4764
Mitochondria 0.0014 0.0002 0.0015 0.0007 0.0252 0.0003 0.0022 0.0003 0.0098 0.0005 0.0031 0.0021 0.0124 0.0006 0.0108 0.0011 0.0012 0.014
None 0.0738 0.046 0.0264 0.1503 0.0336 0.0283 0.0871 0.0304 0.0895 0.0949 0.1429 0.0779 0.0238 0.0479 0.0131 0.0159 0.0591 0.0161
Nuclear Periphery 0.0026 0.0007 0.0007 0.0005 0.0366 0.0006 0.0157 0.0007 0.0023 0.0007 0.0013 0.0014 0.0088 0.0016 0.0014 0.0005 0.0004 0.0006
Nucleolus 0.0005 0.0027 0.0006 0.0001 0.0023 0.0001 0.0031 0.0023 0.0007 0.0002 0.0004 0.0003 0.0004 0.0225 0.0012 0.0008 0.0002 0.0009
Nucleus 0.0007 0.0143 0.0003 0.0003 0.0023 0.0002 0.0078 0.0008 0.0007 0.0002 0.001 0.0005 0.0009 0.0024 0.0012 0.0003 0.0001 0.0005
Peroxisomes 0.0095 0.0178 0.0244 0.0043 0.0106 0.0156 0.021 0.0055 0.0065 0.0718 0.0372 0.0057 0.0125 0.0092 0.0127 0.0152 0.0316 0.0152
Punctate Nuclear 0.0057 0.0051 0.01 0.0016 0.0126 0.0034 0.0106 0.0095 0.0125 0.0011 0.0016 0.0025 0.0191 0.0108 0.0094 0.0098 0.0019 0.0127
Vacuole 0.0073 0.0094 0.0033 0.0015 0.0028 0.0063 0.0079 0.0096 0.0062 0.01 0.0096 0.0057 0.0095 0.0432 0.0075 0.0062 0.0035 0.0042
Vacuole Periphery 0.0006 0.0001 0.0002 0.0002 0.0044 0.0002 0.0019 0.0002 0.0006 0.0002 0.0003 0.0003 0.0029 0.0016 0.0004 0.0003 0.0001 0.0003

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 30.3626 17.2724 21.514 26.9991 18.3412 28.2768 29.0029 28.8362 32.0822 24.5803
Translational Efficiency 1.1366 1.8149 1.2219 1.0905 1.4044 1.7596 1.3837 1.3661 1.318 1.1754

Hit Data

Dataset Hit
Protein Concentration
Protein Localization
Gene Expression
Translational Efficiency
Standard name
Human Ortholog
Description Dehydrogenase involved in ubiquinone and sphingolipid metabolism; oxidizes 4-hydroxybenzaldehyde into 4-hydroxybenzoic acid in ubiquinone biosynthesis; converts hexadecenal to hexadecenoic acid in sphingosine 1-phosphate breakdown pathway; located in the mitochondrial outer membrane and also in lipid particles; human homolog ALDH3A2, a fatty aldehyde dehydrogenase (FALDH) mutated in neurocutaneous disorder Sjogren-Larsson syndrome, can complement yeast hfd1 mutant
Localization
Cell Percentages ER (25%), cytoplasm (8%), mixed (61%)
Cell Cycle Regulation Yes
cytoplasm - MA (9.2e-06)
Subcompartmental Group N/A

Hfd1

Hfd1


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)

Molecular Function (Gene Ontology)

Cellular Component (Gene Ontology)


Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Hfd1-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available