Standard name | |
---|---|
Human Ortholog | |
Description | Mitochondrial external NADH dehydrogenase; type II NAD(P)H:quinone oxidoreductase that catalyzes the oxidation of cytosolic NADH; Nde1p and Nde2p provide cytosolic NADH to the mitochondrial respiratory chain; NDE1 has a paralog, NDE2, that arose from the whole genome duplication |
ensLOC | DeepLoc | |||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 1 | 1 | 1 | 5 | 4 | 0 | 1 | – | 1 | 0 | 0 | 0 | – | 2 | 2 | 1 | 1 | 4 | 2 | 2 | 2 | 0 | 3 | 0 |
Bud | 3 | 2 | 1 | 3 | 2 | 5 | 8 | – | 10 | 5 | 5 | 10 | – | 0 | 0 | 0 | 3 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 1 | – | 2 | 0 | 1 | 2 | – | 0 | 0 | 0 | 0 | 1 | – | – | – | – | – | – |
Cell Periphery | 4 | 10 | 9 | 18 | 7 | 9 | 4 | – | 3 | 5 | 7 | 5 | – | 4 | 3 | 5 | 9 | 9 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 3 | 4 | 3 | 9 | 8 | 9 | 25 | – | 22 | 11 | 16 | 12 | – | 2 | 3 | 3 | 8 | 16 | 1 | 3 | 0 | 0 | 0 | 0 |
Endoplasmic Reticulum | 2 | 2 | 1 | 1 | 1 | 1 | 6 | – | 1 | 1 | 3 | 2 | – | 0 | 1 | 3 | 3 | 4 | 0 | 2 | 0 | 0 | 1 | 1 |
Endosome | 0 | 2 | 3 | 4 | 7 | 21 | 29 | – | 12 | 11 | 3 | 5 | – | 0 | 2 | 0 | 1 | 1 | 7 | 3 | 4 | 1 | 4 | 1 |
Golgi | 4 | 27 | 60 | 69 | 85 | 23 | 22 | – | 5 | 8 | 8 | 9 | – | 50 | 74 | 28 | 53 | 45 | 9 | 26 | 3 | 0 | 5 | 6 |
Mitochondria | 264 | 164 | 91 | 250 | 174 | 305 | 369 | – | 263 | 277 | 426 | 365 | – | 68 | 115 | 4 | 5 | 7 | 245 | 170 | 150 | 13 | 39 | 29 |
Nucleus | 2 | 2 | 2 | 0 | 4 | 5 | 5 | – | 3 | 7 | 4 | 6 | – | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
Nuclear Periphery | 18 | 1 | 2 | 2 | 4 | 31 | 29 | – | 23 | 23 | 32 | 35 | – | 2 | 1 | 0 | 2 | 2 | 0 | 1 | 0 | 0 | 0 | 0 |
Nucleolus | 14 | 3 | 2 | 2 | 10 | 18 | 30 | – | 17 | 24 | 33 | 21 | – | 0 | 3 | 1 | 4 | 2 | 2 | 1 | 0 | 0 | 0 | 0 |
Peroxisomes | 1 | 4 | 2 | 3 | 1 | 1 | 9 | – | 3 | 0 | 1 | 3 | – | 2 | 1 | 0 | 2 | 6 | 9 | 2 | 3 | 0 | 0 | 0 |
SpindlePole | 1 | 1 | 4 | 0 | 1 | 3 | 9 | – | 1 | 8 | 3 | 4 | – | 0 | 0 | 1 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
Vac/Vac Membrane | 53 | 52 | 43 | 27 | 59 | 67 | 60 | – | 33 | 31 | 36 | 33 | – | 20 | 26 | 15 | 25 | 27 | 5 | 8 | 3 | 0 | 5 | 7 |
Unique Cell Count | 286 | 204 | 146 | 280 | 258 | 400 | 492 | 325 | 340 | 479 | 417 | 102 | 164 | 45 | 103 | 110 | 290 | 226 | 173 | 17 | 63 | 50 | ||
Labelled Cell Count | 370 | 275 | 224 | 393 | 367 | 498 | 607 | 399 | 411 | 578 | 512 | 150 | 231 | 61 | 117 | 126 | 290 | 226 | 173 | 17 | 63 | 50 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 7.2 | 11.5 | 9.7 | 9.8 | 10.3 | 8.1 | 7.9 | – | 6.9 | 7.4 | 7.4 | 7.6 | – | 14.3 | 12.4 | 12.6 | 11.1 | 11.0 | – | 13.9 | – |
Std Deviation (1e-4) | 1.3 | 4.1 | 1.6 | 1.8 | 2.5 | 1.9 | 2.6 | – | 1.8 | 2.0 | 2.0 | 1.9 | – | 3.3 | 2.7 | 4.2 | 2.8 | 3.3 | – | 6.3 | – |
Intensity Change (Log2) | – | – | – | 0.02 | 0.08 | -0.26 | -0.3 | – | -0.5 | -0.39 | -0.4 | -0.35 | – | 0.55 | 0.35 | 0.38 | 0.19 | 0.18 | – | 0.52 | – |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0.1 | -1.7 | 0 | 0 | – | 0 | 0 | 0 | 0 | – | -0.8 | -2.0 | 0 | 0.8 | 0.6 |
Cytoplasm | 0 | 0 | 0 | 1.6 | – | 2.1 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 3.8 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 |
Endosome | 0 | 0 | 1.6 | 1.9 | – | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 |
Golgi | -3.5 | -1.6 | -10.2 | -11.6 | – | -11.5 | -11.3 | -13.4 | -12.3 | – | 1.2 | 0.7 | 2.5 | 1.6 | 0 |
Mitochondria | 6.6 | 1.0 | 3.2 | 3.0 | – | 4.3 | 4.5 | 7.4 | 6.7 | – | 0.7 | 1.5 | -6.3 | -9.2 | -9.1 |
Nucleus | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 |
Nuclear Periphery | 0 | 0 | 2.8 | 2.2 | – | 2.6 | 2.5 | 2.5 | 2.9 | – | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 0 | 0 | 1.7 | 2.3 | – | 2.0 | 2.6 | 2.5 | 1.9 | – | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 |
Vacuole | -5.2 | -1.5 | -3.3 | -5.0 | – | -5.3 | -5.7 | -7.0 | -6.6 | – | -1.8 | -2.9 | 0.5 | -0.9 | -0.9 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 23.6652 | 21.4915 | 21.9706 | 19.7251 | 18.2644 | 22.111 | 22.8501 | 24.312 | 22.2515 | 17.9587 | 21.2192 | 22.1901 | 21.1986 | 19.4219 | 22.7589 | 20.012 | 17.4753 | 18.2201 |
Actin | 0.0013 | 0.0009 | 0.0007 | 0 | 0.0001 | 0.0013 | 0.0102 | 0.001 | 0.0092 | 0.0268 | 0.0021 | 0.0003 | 0.0354 | 0.0048 | 0.0182 | 0.0046 | 0.0003 | 0.0008 |
Bud | 0 | 0.0001 | 0.0001 | 0 | 0 | 0.0001 | 0.0002 | 0.0001 | 0.0008 | 0.0016 | 0 | 0.0001 | 0.0005 | 0.0009 | 0.0003 | 0.0002 | 0.0001 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0.0002 | 0 | 0.0008 | 0.0008 | 0 | 0 | 0.0004 | 0.0005 | 0 | 0.0004 | 0.0001 | 0 |
Bud Periphery | 0.0001 | 0.0001 | 0.0001 | 0 | 0.0001 | 0.0002 | 0.0004 | 0.0002 | 0.0017 | 0.0019 | 0.0001 | 0.0002 | 0.0007 | 0.0012 | 0.001 | 0.0005 | 0.0002 | 0 |
Bud Site | 0.0001 | 0.0001 | 0.0003 | 0 | 0 | 0.0001 | 0.0008 | 0.0002 | 0.0034 | 0.0058 | 0.0002 | 0.0001 | 0.0028 | 0.0183 | 0.0008 | 0.0009 | 0.0001 | 0.0001 |
Cell Periphery | 0.0002 | 0.0004 | 0.0003 | 0.0001 | 0.0004 | 0.0001 | 0.0003 | 0.0004 | 0.0005 | 0.0011 | 0.0001 | 0.0001 | 0.0003 | 0.0021 | 0.0001 | 0.0001 | 0.0002 | 0.0001 |
Cytoplasm | 0 | 0 | 0.0001 | 0 | 0 | 0 | 0.0007 | 0 | 0.0008 | 0.0024 | 0.0006 | 0 | 0.0006 | 0 | 0 | 0 | 0.0001 | 0 |
Cytoplasmic Foci | 0.0008 | 0.0004 | 0.0058 | 0 | 0.0001 | 0.0002 | 0.0131 | 0.0003 | 0.0021 | 0.0349 | 0.0077 | 0.0001 | 0.0124 | 0.0004 | 0.0003 | 0.0038 | 0.0015 | 0.0004 |
Eisosomes | 0.0002 | 0.0003 | 0.0002 | 0.0001 | 0.0002 | 0.0001 | 0.0004 | 0.001 | 0.0005 | 0.0017 | 0.0003 | 0.0001 | 0.0003 | 0.0003 | 0.0008 | 0.0002 | 0.0001 | 0.0001 |
Endoplasmic Reticulum | 0 | 0 | 0.0002 | 0 | 0 | 0 | 0.0011 | 0 | 0.0009 | 0.0022 | 0.0002 | 0 | 0.0004 | 0 | 0.0002 | 0.0001 | 0.0003 | 0 |
Endosome | 0.0007 | 0.0013 | 0.0016 | 0.0002 | 0.0033 | 0.0011 | 0.0052 | 0.002 | 0.0059 | 0.0355 | 0.0081 | 0.0002 | 0.0083 | 0.0014 | 0.0009 | 0.0043 | 0.0392 | 0.0004 |
Golgi | 0.0041 | 0.0034 | 0.001 | 0.0011 | 0.005 | 0.0046 | 0.0044 | 0.0068 | 0.0096 | 0.0258 | 0.0016 | 0.0004 | 0.01 | 0.0026 | 0.002 | 0.0071 | 0.0245 | 0.0011 |
Lipid Particles | 0.0045 | 0.0041 | 0.0051 | 0.0005 | 0.0007 | 0.002 | 0.0173 | 0.004 | 0.0063 | 0.0144 | 0.0113 | 0.0006 | 0.0548 | 0.0063 | 0.0029 | 0.0431 | 0.0186 | 0.0048 |
Mitochondria | 0.9763 | 0.9766 | 0.9578 | 0.994 | 0.9774 | 0.9761 | 0.9145 | 0.9559 | 0.9301 | 0.7961 | 0.9425 | 0.9919 | 0.8221 | 0.9102 | 0.9677 | 0.9114 | 0.8411 | 0.9864 |
None | 0.0001 | 0 | 0.0007 | 0 | 0 | 0 | 0.0007 | 0 | 0.0021 | 0.004 | 0.0013 | 0 | 0.0031 | 0 | 0.0002 | 0.0001 | 0.0001 | 0 |
Nuclear Periphery | 0 | 0 | 0.0004 | 0 | 0 | 0.0001 | 0.0049 | 0.0001 | 0.0029 | 0.0016 | 0.0025 | 0 | 0.0009 | 0.0001 | 0.0007 | 0.0001 | 0.0006 | 0 |
Nucleolus | 0.0024 | 0.0002 | 0.0018 | 0 | 0 | 0 | 0.0015 | 0.0002 | 0.0014 | 0.0016 | 0.0005 | 0.0001 | 0.0045 | 0.0016 | 0.0001 | 0.0008 | 0.0004 | 0.0001 |
Nucleus | 0.0003 | 0.0001 | 0.0007 | 0 | 0 | 0 | 0.0005 | 0.0001 | 0.0017 | 0.0006 | 0.0005 | 0 | 0.0006 | 0.0005 | 0.0001 | 0.0003 | 0.0003 | 0 |
Peroxisomes | 0.0013 | 0.0022 | 0.0027 | 0.0001 | 0.0001 | 0.0004 | 0.0067 | 0.0016 | 0.0085 | 0.0322 | 0.0072 | 0.001 | 0.0211 | 0.0025 | 0.0012 | 0.0176 | 0.0008 | 0.0034 |
Punctate Nuclear | 0.0001 | 0 | 0.0009 | 0 | 0 | 0 | 0.0004 | 0 | 0.0006 | 0.0037 | 0.0115 | 0 | 0.0028 | 0 | 0.0001 | 0.0004 | 0 | 0 |
Vacuole | 0.0014 | 0.0015 | 0.0044 | 0.0003 | 0.0019 | 0.0009 | 0.0022 | 0.0042 | 0.0038 | 0.0021 | 0.0003 | 0.0009 | 0.003 | 0.0246 | 0.0003 | 0.0012 | 0.0163 | 0.0003 |
Vacuole Periphery | 0.0062 | 0.008 | 0.0152 | 0.0035 | 0.0104 | 0.0125 | 0.0145 | 0.0219 | 0.0062 | 0.0031 | 0.0014 | 0.0042 | 0.015 | 0.0216 | 0.0018 | 0.0029 | 0.055 | 0.002 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 55.0719 | 98.4618 | 101.7662 | 110.3813 | 76.5033 | 71.4228 | 110.9619 | 114.5875 | 115.452 | 92.159 |
Translational Efficiency | 0.9675 | 1.1278 | 1.2491 | 1.3073 | 1.041 | 0.8644 | 1.1044 | 1.1691 | 1.0577 | 1.034 |
Dataset | Hit |
---|---|
Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✔ |
Translational Efficiency | ✔ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
---|
Gene | Images |
---|
Gene | Images |
---|