Standard name
Human Ortholog
Description Ribonuclease H1; able to bind double-stranded RNAs and RNA-DNA hybrids; associates with RNAse polymerase I.
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Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0.05 0 0.06 0 0 0 0 0 0 0 – 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 – – – – – – –
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0
Cytoplasm 0.93 0.97 0.94 0.96 0.96 0.96 0.9 0.89 0.82 0.79 0.72 0.79 0.99 0.98 1.0 0.96 0.92 – 0.69 0.79 0.61 0.84 0.81 0.81
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.07 0.07 – 0 0 0 0 0 0
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0
Mitochondria 0.12 0 0 0 0 0.09 0.17 0.15 0.38 0.27 0.45 0.32 0 0 0 0 0 – 0.16 0.1 0.16 0.08 0.07 0.05
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 – 0 0 0.06 0 0 0
Vac/Vac Membrane 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 – 0 0.05 0.05 0 0 0
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 – 2 2 1 1 3 5
Bud 0 2 0 0 0 0 3 1 4 8 3 1 0 1 0 0 0 – 1 0 3 1 4 5
Bud Neck 1 1 4 3 3 5 3 11 4 14 3 2 5 0 1 0 1 – 0 1 1 0 1 2
Bud Site 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 – – – – – – –
Cell Periphery 0 0 0 1 2 2 1 1 0 0 0 0 0 0 0 3 2 – 1 1 1 0 1 2
Cytoplasm 191 202 103 115 192 191 250 193 141 190 123 148 211 200 246 297 193 – 135 168 67 109 168 203
Endoplasmic Reticulum 1 0 0 0 0 0 0 0 0 0 2 0 0 0 0 22 14 – 2 0 0 0 0 3
Endosome 0 1 0 1 1 0 0 1 0 0 0 0 0 1 0 1 4 – 2 2 1 0 0 1
Golgi 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 – 1 0 0 0 0 1
Mitochondria 24 3 4 4 3 17 47 32 65 65 76 61 1 0 0 7 4 – 30 21 17 10 14 12
Nucleus 0 0 0 0 2 0 4 2 2 3 0 1 0 0 0 0 1 – 0 1 0 0 0 0
Nuclear Periphery 1 0 0 0 0 0 3 0 0 0 1 0 0 0 0 0 0 – 1 0 0 0 0 0
Nucleolus 0 0 1 0 0 0 0 0 1 0 2 0 0 0 0 0 0 – 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0
SpindlePole 0 0 1 1 2 1 6 6 0 4 2 4 1 0 0 1 1 – 3 0 6 0 3 3
Vac/Vac Membrane 1 4 0 0 1 1 5 6 1 0 0 4 0 2 1 11 9 – 3 10 4 1 2 3
Unique Cell Count 205 208 109 120 199 199 278 217 172 241 170 188 213 204 247 310 209 196 214 110 131 208 251
Labelled Cell Count 219 213 113 126 206 217 323 253 218 284 213 221 218 204 248 343 230 196 214 110 131 208 251


Cytoplasm, Nucleus

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 3.0 3.9 4.9 4.5 4.7 4.0 3.5 4.2 3.1 3.2 3.0 3.4 4.1 4.9 4.7 5.0 5.2 4.7 4.4 4.6 4.8
Std Deviation (1e-4) 0.7 0.9 2.2 2.4 2.2 2.1 1.8 2.3 1.8 1.3 1.4 1.3 0.8 1.8 1.5 1.0 1.3 0.9 1.6 1.4 1.6
Intensity Change (Log2) – – – -0.11 -0.06 -0.29 -0.49 -0.23 -0.65 -0.59 -0.71 -0.54 -0.24 0.01 -0.05 0.05 0.09 -0.05 -0.15 -0.07 -0.0


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Actin – – – – – – – – – – – – – – –
Bud – – – – – – – – – – – – – – –
Bud Neck – – – – – – – – – – – – – – –
Bud Site – – – – – – – – – – – – – – –
Cell Periphery – – – – – – – – – – – – – – –
Cyto – – – – – – – – – – – – – – –
Endoplasmic Reticulum – – – – – – – – – – – – – – –
Endosome – – – – – – – – – – – – – – –
Golgi – – – – – – – – – – – – – – –
Mitochondria – – – – – – – – – – – – – – –
Nuclear Periphery – – – – – – – – – – – – – – –
Nuc – – – – – – – – – – – – – – –
Nucleolus – – – – – – – – – – – – – – –
Peroxisomes – – – – – – – – – – – – – – –
SpindlePole – – – – – – – – – – – – – – –
Vac – – – – – – – – – – – – – – –
Cortical Patches – – – – – – – – – – – – – – –
Cytoplasm – – – – – – – – – – – – – – –
Nucleus – – – – – – – – – – – – – – –
Vacuole – – – – – – – – – – – – – – –

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration 0.0669 -0.2448 -0.0448 0.5134 0.0834 0.0446 -0.5227 -0.6373 -0.5227 -0.8523 -0.3491 -0.6725 -1.4738 -1.5833 -1.6525 -0.1578 -1.2101 -1.7068
Actin 0.0133 0.0025 0.0022 0.0534 0.0034 0.0004 0.0157 0.0002 0.0214 0.0001 0.064 0.0002 0.0107 0.0003 0.0015 0.0087 0.0117 0.0038
Bud 0.0008 0.0001 0.0003 0.0002 0.0014 0.0001 0.0008 0.0023 0.0014 0 0.0003 0.002 0.002 0.001 0.0013 0.0053 0.0035 0.0002
Bud Neck 0.0041 0.0002 0.0002 0.0007 0.0001 0.0008 0.003 0.0001 0.0027 0.0003 0.0014 0.0005 0.0038 0.0003 0.0001 0.0007 0.0005 0.0019
Bud Periphery 0.0026 0.0001 0.0003 0.0003 0.005 0.0002 0.0021 0.006 0.0026 0 0.0005 0.0072 0.0026 0.002 0.0034 0.0196 0.0145 0.0003
Bud Site 0.0064 0.0005 0.0027 0.0018 0.0022 0 0.0092 0.002 0.0037 0 0.0013 0.0002 0.0197 0.001 0.0024 0.0034 0.0005 0.0001
Cell Periphery 0.0007 0.0001 0.0001 0.0001 0.0002 0 0.0027 0.0001 0.0006 0 0.0001 0.0001 0.0005 0.0001 0.0002 0.0006 0.0002 0.0001
Cytoplasm 0.0666 0.0714 0.0483 0.0626 0.0162 0.07 0.03 0.0265 0.0414 0.0294 0.0208 0.0595 0.0371 0.0585 0.0756 0.0564 0.1432 0.1554
Cytoplasmic Foci 0.0254 0.0062 0.0182 0.0245 0.0231 0.0022 0.016 0.0039 0.0074 0.0008 0.0222 0.0109 0.0365 0.0072 0.0104 0.0283 0.0258 0.0135
Eisosomes 0.0004 0.0005 0.0001 0.0004 0.0002 0.0001 0.0005 0.0001 0.0009 0.0001 0.0004 0.0001 0.0008 0.0003 0.0004 0.0004 0.0001 0.0001
Endoplasmic Reticulum 0.0058 0.0008 0.001 0.0009 0.0009 0.0006 0.0039 0.0004 0.0027 0.0003 0.0015 0.0003 0.003 0.0009 0.0027 0.0048 0.0026 0.0033
Endosome 0.0282 0.0009 0.018 0.0233 0.014 0.0007 0.0105 0.0004 0.0093 0.0004 0.0244 0.0006 0.0183 0.0011 0.0157 0.104 0.0146 0.0088
Golgi 0.007 0.0001 0.0083 0.0236 0.0057 0.0001 0.0025 0.0001 0.0031 0 0.0078 0 0.0042 0.0001 0.0046 0.0129 0.0213 0.0023
Lipid Particles 0.0145 0.0003 0.0057 0.0276 0.0139 0.0002 0.0043 0.0003 0.0028 0 0.0181 0.0001 0.0221 0.0004 0.0055 0.0069 0.0249 0.0042
Mitochondria 0.0088 0.0004 0.0019 0.0054 0.0097 0.0072 0.0051 0.0024 0.0092 0.0004 0.0028 0.0003 0.0055 0.0009 0.0044 0.0899 0.0135 0.0153
None 0.7418 0.8544 0.8745 0.6897 0.7876 0.877 0.8562 0.9348 0.8639 0.8889 0.7535 0.8826 0.7833 0.887 0.8425 0.4672 0.5421 0.7435
Nuclear Periphery 0.0095 0.0037 0.0007 0.0015 0.0015 0.001 0.0058 0.0008 0.0033 0.0019 0.0136 0.0005 0.0069 0.0006 0.0025 0.0066 0.0133 0.0028
Nucleolus 0.0041 0.0008 0.0002 0.0007 0.0023 0.0013 0.0012 0.0017 0.0008 0.0025 0.0012 0.0007 0.0026 0.0014 0.0005 0.0054 0.0008 0.0003
Nucleus 0.0227 0.0403 0.0085 0.0372 0.054 0.0321 0.0044 0.0057 0.0091 0.0676 0.0031 0.0309 0.0191 0.0293 0.0131 0.1294 0.098 0.0345
Peroxisomes 0.0221 0.0019 0.0057 0.0397 0.0529 0.0004 0.0046 0.0027 0.0079 0 0.0469 0.0001 0.0049 0.0006 0.0077 0.0014 0.0619 0.0028
Punctate Nuclear 0.0078 0.0144 0.0018 0.0033 0.0023 0.005 0.0173 0.0087 0.0039 0.007 0.0141 0.0027 0.0104 0.0062 0.0016 0.0124 0.0018 0.0044
Vacuole 0.005 0.0004 0.0009 0.0025 0.0027 0.0004 0.0032 0.0006 0.0015 0.0002 0.0009 0.0005 0.0044 0.0008 0.0031 0.0274 0.0023 0.002
Vacuole Periphery 0.0022 0.0001 0.0003 0.0006 0.0009 0.0001 0.001 0.0002 0.0005 0 0.0011 0.0001 0.0017 0.0001 0.0008 0.0082 0.003 0.0004

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 10.0118 13.1894 16.7778 12.5926 8.8815 9.4796 10.7162 13.1796 10.4034 11.9342
Translational Efficiency 1.1916 0.8155 0.5503 0.7168 0.9694 1.4927 0.8963 0.6247 0.8214 0.948

Hit Data

Dataset Hit
Protein Concentration ✔
Protein Localization ✘
Gene Expression ✔
Translational Efficiency ✔
Standard name
Human Ortholog
Description Ribonuclease H1; able to bind double-stranded RNAs and RNA-DNA hybrids; associates with RNAse polymerase I.
Localization
Cell Percentages cytoplasm (25%)
Cell Cycle Regulation No
Subcompartmental Group cytoplasm-9

Rnh1

Rnh1


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)
Molecular Function (Gene Ontology)
Cellular Component (Gene Ontology)

Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Rnh1-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available