Standard name
Human Ortholog
Description Probable DNA helicase; involved in sister-chromatid cohesion and genome integrity and interstrand cross-link repair; interacts with ECO1 and CTF18; mutants are defective in silencing, rDNA recombination, aging and the heat shock response; FANCJ-like helicase family member; mutations in the human homolog, DDX11/ChLR1, cause Warsaw breakage syndrome
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Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0.05 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 – – – – – –
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm 0.43 0.55 0.85 0.78 0.77 0.7 0.63 0.59 0.51 0.5 0.35 0.44 0.53 0.55 0.7 0.54 0.47 0.45 0.22 0.39 0.42 0.31 0.26 0.35
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.07 0.05 0.05 0 0 0 0 0 0
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.06 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0.19 0.29 0 0.13 0 0.29 0.34 0.24 0.54 0.48 0.66 0.5 0.13 0 0 0 0 0 0 0.08 0.05 0.09 0.13 0.11
Nucleus 0.14 0.1 0 0.06 0.1 0.07 0.13 0.16 0.13 0.14 0.15 0.17 0.13 0.06 0 0.1 0.24 0.15 0.34 0.16 0.1 0.12 0.07 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0.36 0.11 0.11 0.05 0.12 0.06 0 0.07 0.05 0.06 0 0.07 0.31 0.45 0.35 0.39 0.31 0.44 0.29 0.28 0.32 0.38 0.38 0.33
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 1 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 1 0 3 6 8
Bud 0 1 0 0 0 1 2 5 4 2 11 3 0 0 1 1 0 0 4 1 4 0 15 8
Bud Neck 0 2 6 7 11 4 3 23 7 3 2 7 0 0 0 1 0 0 0 1 1 1 4 6
Bud Site 0 0 0 0 0 1 2 0 5 3 8 10 0 0 0 0 0 0 – – – – – –
Cell Periphery 0 0 1 1 1 0 0 1 1 0 1 0 0 0 0 0 0 1 0 0 0 0 1 0
Cytoplasm 88 80 204 189 215 180 251 249 198 180 106 131 120 160 254 126 104 111 57 82 132 65 108 127
Endoplasmic Reticulum 4 6 0 0 1 0 0 1 0 0 0 0 0 0 0 16 11 13 1 0 1 1 3 8
Endosome 1 0 0 1 0 0 0 1 1 0 0 0 2 11 7 9 4 14 6 0 1 2 5 7
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 1 0 0 0 4 1
Mitochondria 39 42 9 31 10 74 134 102 210 172 200 150 29 13 12 6 5 5 11 16 17 19 52 39
Nucleus 29 14 5 14 27 19 53 69 50 51 46 50 29 18 10 24 52 36 87 33 30 24 28 13
Nuclear Periphery 2 0 0 0 0 0 0 0 1 0 2 0 0 0 1 0 1 0 1 0 1 0 0 0
Nucleolus 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0
SpindlePole 0 0 1 4 3 2 11 8 4 2 6 7 0 0 0 2 0 0 7 5 8 3 9 7
Vac/Vac Membrane 73 16 26 11 33 15 13 30 18 20 9 21 71 130 128 91 68 108 74 59 102 81 158 118
Unique Cell Count 203 145 240 243 278 258 397 419 390 362 304 299 228 291 363 234 219 246 261 213 316 214 413 363
Labelled Cell Count 237 162 252 259 301 296 469 491 499 434 391 380 251 332 413 277 246 291 261 213 316 214 413 363


Cytoplasm, Nucleus

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 3.9 3.3 4.7 4.2 4.9 3.7 3.9 4.0 3.5 3.4 3.0 3.6 4.1 4.1 4.3 6.0 6.0 5.8 3.9 4.2 4.4
Std Deviation (1e-4) 1.0 0.5 1.2 1.3 1.5 1.4 1.1 1.2 2.0 1.3 0.7 0.6 1.3 1.0 1.3 1.8 1.3 1.2 1.2 2.2 1.8
Intensity Change (Log2) – – – -0.15 0.07 -0.34 -0.27 -0.21 -0.44 -0.47 -0.66 -0.38 -0.18 -0.19 -0.12 0.36 0.35 0.3 -0.26 -0.17 -0.09

WT3RAP60RAP140RAP220RAP300RAP380RAP460RAP540RAP620RAP7000246WT3HU80HU120HU1600246WT3rpd3Δ_1rpd3Δ_2rpd3Δ_30246WT1AF100AF140AF1800246
rapamycinhydroxy-urearpd3 knockoutalpha-factorMultiple Condition Time-Course Intensity PlotsGFP Intensity (1e-4)GFP Intensity (1e-4)GFP Intensity (1e-4)GFP Intensity (1e-4)

Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Actin – – – – – – – – – – – – – – –
Bud – – – – – – – – – – – – 0 0 0
Bud Neck – – – – – – – – – – – – 0 0 0
Bud Site – – – – – – – – – – – – 0 0 0
Cell Periphery – – – – – – – – – – – – 0 0 0
Cyto – – – – – – – – – – – – – – –
Endoplasmic Reticulum – – – – – – – – – – – – 0 0 0
Endosome – – – – – – – – – – – – 0 0 0
Golgi – – – – – – – – – – – – 0 0 0
Mitochondria – – – – – – – – – – – – 0 0 0
Nuclear Periphery – – – – – – – – – – – – 0 0 0
Nuc – – – – – – – – – – – – – – –
Nucleolus – – – – – – – – – – – – 0 0 0
Peroxisomes – – – – – – – – – – – – 0 0 0
SpindlePole – – – – – – – – – – – – 0 0 0
Vac – – – – – – – – – – – – – – –
Cortical Patches – – – – – – – – – – – – 0 0 0
Cytoplasm – – – – – – – – – – – – 0 0 0
Nucleus – – – – – – – – – – – – 0 0 0
Vacuole – – – – – – – – – – – – 7.1 5.4 8.2

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration 1.6048 1.8065 2.1197 0.6866 1.0019 1.7788 -0.94 -0.7744 -0.8169 -0.775 -0.9968 -0.8968 0.315 -0.696 -0.7216 -0.2905 -1.2024 -0.9106
Actin 0.0313 0.0147 0.0107 0.0008 0.0146 0.0014 0.0302 0.0002 0.0024 0.0106 0.0036 0.0021 0.0498 0.0032 0.0124 0.0682 0.0001 0.0278
Bud 0.0002 0.0001 0.0008 0.0001 0.0003 0.0001 0.0018 0.0045 0.0001 0.0002 0.0022 0.0005 0.0021 0.0017 0.0014 0.0004 0.0001 0.0003
Bud Neck 0.0138 0.0004 0.0013 0.0011 0.001 0.0042 0.0027 0.0003 0.0011 0.0006 0.0016 0.0087 0.0132 0.0004 0.0029 0.0015 0.001 0.0023
Bud Periphery 0.0004 0.0001 0.0024 0.0002 0.0007 0.0002 0.0015 0.0005 0.0001 0.0002 0.0033 0.0013 0.0032 0.0035 0.0014 0.0005 0.0001 0.0004
Bud Site 0.0053 0.0017 0.0054 0.0002 0.0034 0.0002 0.0085 0.0014 0.0015 0.0004 0.0044 0.0007 0.0138 0.0088 0.0063 0.0011 0.0002 0.0003
Cell Periphery 0.0002 0.0004 0.0033 0.0001 0.0004 0.0003 0.0005 0.0001 0.0001 0.0001 0.0001 0.0001 0.0009 0.0003 0.0003 0.0001 0 0.0001
Cytoplasm 0.1684 0.1607 0.1196 0.2282 0.2293 0.2198 0.1912 0.2656 0.1859 0.1594 0.2304 0.2306 0.1994 0.2764 0.2724 0.1362 0.2628 0.2667
Cytoplasmic Foci 0.0118 0.0057 0.0261 0.003 0.0113 0.0118 0.032 0.005 0.0126 0.01 0.0149 0.0168 0.0495 0.0067 0.0107 0.021 0.0049 0.0247
Eisosomes 0.0009 0.0002 0.0007 0.0001 0.0016 0.0002 0.0004 0.0001 0.0001 0.0001 0.0001 0 0.0007 0.0002 0.0002 0.0002 0 0.0001
Endoplasmic Reticulum 0.0051 0.0062 0.005 0.0037 0.0033 0.0032 0.0055 0.0041 0.0044 0.0022 0.0034 0.0027 0.0125 0.0098 0.0062 0.0126 0.0022 0.0074
Endosome 0.006 0.0021 0.0044 0.0028 0.0241 0.0043 0.0351 0.0038 0.0148 0.0273 0.0231 0.0072 0.05 0.0053 0.0185 0.028 0.0022 0.0126
Golgi 0.0027 0.0002 0.0026 0.0001 0.0118 0.0006 0.0059 0.0001 0.0014 0.0148 0.0139 0.0026 0.0197 0.0004 0.005 0.0172 0 0.0048
Lipid Particles 0.0136 0.0025 0.011 0.0009 0.0493 0.0086 0.0166 0.0005 0.006 0.0093 0.0051 0.0044 0.0341 0.0013 0.0025 0.0105 0.0005 0.0051
Mitochondria 0.0067 0.0005 0.0185 0.0019 0.0633 0.0012 0.0174 0.0007 0.002 0.0053 0.0062 0.002 0.0185 0.0046 0.0058 0.0046 0.0003 0.0025
None 0.5481 0.6278 0.628 0.5651 0.3404 0.4846 0.3325 0.4695 0.3904 0.3768 0.3768 0.2463 0.3669 0.4489 0.3811 0.3761 0.3879 0.2744
Nuclear Periphery 0.0153 0.0063 0.0186 0.0198 0.0046 0.0056 0.0153 0.0142 0.0277 0.0118 0.0173 0.0089 0.023 0.0254 0.0191 0.0289 0.0064 0.0184
Nucleolus 0.0015 0.0013 0.0022 0.0022 0.0015 0.003 0.0049 0.0021 0.0086 0.0034 0.004 0.0049 0.0022 0.002 0.0023 0.0012 0.0017 0.0056
Nucleus 0.1441 0.1627 0.1097 0.1536 0.1852 0.2174 0.2157 0.2134 0.3036 0.3388 0.2468 0.3934 0.0872 0.1769 0.2147 0.2745 0.3038 0.281
Peroxisomes 0.0165 0.0008 0.021 0.0004 0.0428 0.0063 0.0309 0.0001 0.0042 0.0044 0.0039 0.015 0.0216 0.0008 0.0012 0.0031 0.0001 0.0011
Punctate Nuclear 0.0062 0.0037 0.0054 0.0125 0.0055 0.025 0.039 0.0112 0.029 0.0193 0.0328 0.0498 0.0195 0.0158 0.0295 0.011 0.0244 0.0612
Vacuole 0.0016 0.0017 0.0024 0.0021 0.004 0.0018 0.0084 0.0021 0.0032 0.0034 0.0047 0.0017 0.0095 0.0065 0.0042 0.0018 0.001 0.0021
Vacuole Periphery 0.0006 0.0002 0.0008 0.0008 0.0015 0.0003 0.0039 0.0004 0.0009 0.0016 0.0014 0.0004 0.0027 0.0015 0.0018 0.0013 0.0002 0.0009

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 13.2272 8.7729 7.359 11.136 12.1707 8.529 8.581 8.0692 9.9187 12.9302
Translational Efficiency 0.3489 0.3726 0.4224 0.3628 0.2657 0.5911 0.4796 0.3802 0.2438 0.3064

Hit Data

Dataset Hit
Protein Concentration ✘
Protein Localization ✘
Gene Expression ✔
Translational Efficiency ✘

Micrographs

Cell Count

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
1966 439 493 1267 1297 1964 1157 1465 3263 2403 1650 2732

Protein Abundance

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Mean 611.31 747.44 917.77 823.02 680.45 728.21 824.20 783.58 638.79 731.72 852.16 801.87
Standard Deviation 75.58 100.56 140.22 109.12 75.31 94.60 91.38 103.52 82.71 96.00 116.47 107.96
Intensity Change Log 2 — 0.290054 0.586228 0.429023 — 0.097865 0.276505 0.203591 — 0.192013 0.431382 0.314673

Localization Score (DeepLoc)

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Actin 0.000029 0.000364 0.000925 0.001913 0.000128 0.000432 0.000176 0.000704 0.000068 0.000419 0.000400 0.001264
Bud Neck 0.006648 0.020057 0.008651 0.020120 0.003116 0.024442 0.003208 0.007787 0.005244 0.023641 0.004834 0.013506
Bud Site 0.001035 0.010042 0.007999 0.027473 0.000799 0.009077 0.004994 0.025751 0.000941 0.009253 0.005891 0.026550
Cell Periphery 0.000106 0.000184 0.000129 0.000181 0.000109 0.000202 0.000221 0.000265 0.000107 0.000199 0.000193 0.000226
Cytoplasm 0.387930 0.273833 0.036781 0.194541 0.327807 0.315979 0.088875 0.197756 0.364032 0.308279 0.073310 0.196265
Cytoplasmic Foci 0.076802 0.171697 0.001206 0.006972 0.080157 0.115159 0.006105 0.006068 0.078135 0.125488 0.004641 0.006487
Eisosomes 0.000065 0.000101 0.000046 0.000040 0.000056 0.000085 0.000050 0.000042 0.000061 0.000088 0.000049 0.000041
Endoplasmic Reticulum 0.000505 0.001681 0.013732 0.004264 0.000838 0.001116 0.002363 0.002926 0.000638 0.001220 0.005760 0.003546
Endosome 0.001997 0.008005 0.000955 0.007475 0.002747 0.006711 0.000971 0.001701 0.002295 0.006947 0.000966 0.004379
Golgi 0.000273 0.003084 0.000068 0.003999 0.001018 0.002659 0.000091 0.000953 0.000569 0.002736 0.000084 0.002366
Lipid Particles 0.004810 0.006736 0.000839 0.000969 0.005307 0.006623 0.001526 0.000757 0.005007 0.006644 0.001321 0.000856
Mitochondria 0.001509 0.008395 0.000926 0.004815 0.002759 0.010650 0.001084 0.001518 0.002006 0.010238 0.001037 0.003047
Mitotic Spindle 0.000412 0.016103 0.001843 0.031559 0.001676 0.010794 0.001943 0.007491 0.000914 0.011764 0.001913 0.018652
None 0.010043 0.006235 0.003270 0.005964 0.005402 0.005116 0.009767 0.010037 0.008198 0.005320 0.007826 0.008148
Nuclear Periphery 0.000839 0.000961 0.001507 0.002551 0.001043 0.000949 0.001119 0.001509 0.000920 0.000951 0.001235 0.001992
Nuclear Periphery Foci 0.000350 0.000715 0.000560 0.000737 0.000686 0.000403 0.000176 0.000342 0.000484 0.000460 0.000291 0.000525
Nucleolus 0.001848 0.002873 0.001555 0.001504 0.002351 0.003419 0.001029 0.001244 0.002048 0.003319 0.001186 0.001364
Nucleus 0.487855 0.412343 0.900040 0.635548 0.548232 0.449519 0.863498 0.700587 0.511854 0.442727 0.874417 0.670425
Peroxisomes 0.001955 0.022063 0.000200 0.002203 0.002046 0.011274 0.000290 0.000302 0.001991 0.013245 0.000263 0.001184
Vacuole 0.014756 0.033474 0.018597 0.045543 0.013303 0.024310 0.012359 0.031749 0.014179 0.025984 0.014223 0.038146
Vacuole Periphery 0.000232 0.001053 0.000172 0.001631 0.000421 0.001083 0.000155 0.000511 0.000307 0.001077 0.000160 0.001031

Localization Changes (T-score)

R1 R2 R1 & R2
UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14
Actin -7.14 -14.42 -2.95 -2.11 -0.14 -2.07 -1.89 -4.43 -1.69 -3.83 -3.07 -11.75 -4.45 -2.41 -2.23
Bud Neck -4.28 -1.54 -5.83 0.92 -2.85 -11.17 -1.73 -6.43 7.41 -4.34 -10.76 -0.89 -7.48 5.98 -5.93
Bud Site -4.96 -2.64 -8.12 -3.11 -3.05 -6.98 -3.03 -7.99 -4.03 -5.38 -8.00 -3.93 -11.25 -5.24 -6.50
Cell Periphery -3.60 -3.23 -4.70 1.30 -0.86 -5.24 -3.65 -5.19 0.12 -0.17 -6.21 -4.32 -6.81 1.21 0.06
Cytoplasm 9.55 52.62 29.13 8.93 -18.38 1.22 29.67 17.71 18.82 -12.17 8.43 54.60 33.91 22.52 -18.78
Cytoplasmic Foci -9.22 27.97 25.94 16.89 -6.43 -6.55 20.79 20.83 28.40 0.30 -11.03 33.77 33.26 32.90 -1.77
Eisosomes -5.17 1.45 0.66 5.48 -0.92 -6.23 1.06 1.66 7.77 0.12 -7.06 2.25 2.09 8.60 -0.80
Endoplasmic Reticulum -4.75 -16.04 -21.32 -14.65 8.74 -1.21 -11.62 -17.09 -12.73 -4.17 -3.18 -18.34 -27.11 -19.26 3.29
Endosome -7.04 4.00 -3.13 3.99 -4.46 -6.16 4.44 3.13 9.54 -1.82 -9.77 5.78 -0.95 7.99 -4.79
Golgi -3.48 2.95 -1.94 1.57 -2.30 -2.41 2.11 0.99 3.74 -1.48 -4.54 2.72 -0.99 3.30 -2.72
Lipid Particles -2.41 7.68 7.05 8.44 -2.88 -1.98 6.37 9.56 11.77 1.51 -3.03 8.32 11.18 13.43 0.89
Mitochondria -4.93 2.08 -2.03 3.48 -2.80 -5.73 1.76 1.30 8.42 -1.47 -8.34 2.18 -0.41 8.29 -2.97
Mitotic Spindle -3.43 -1.86 -8.03 -1.60 -7.27 -4.91 -0.38 -5.40 -0.55 -5.31 -6.54 -1.73 -9.85 -2.59 -8.97
None 2.47 6.39 4.62 0.85 -3.59 0.20 -1.82 -2.51 -2.72 -0.13 3.35 1.52 1.75 -1.77 -0.20
Nuclear Periphery -0.80 -5.97 -15.52 -16.67 -9.10 0.80 -3.97 -12.74 -15.46 -11.33 -0.35 -6.77 -19.26 -22.65 -15.60
Nuclear Periphery Foci -2.58 -3.22 -5.84 -3.15 -3.15 1.25 2.12 -0.35 -2.76 -5.17 -0.09 0.40 -4.52 -5.08 -6.57
Nucleolus -2.43 1.38 0.86 2.48 -0.10 -1.66 2.65 1.37 4.02 -1.97 -3.14 3.85 1.64 4.51 -1.63
Nucleus 4.77 -41.92 -14.10 -13.09 21.89 9.41 -31.11 -12.93 -23.60 17.07 8.85 -52.48 -20.44 -26.42 26.78
Peroxisomes -6.50 4.37 2.01 6.88 -2.08 -8.66 6.25 5.10 10.49 -0.61 -10.73 6.49 4.26 12.30 -2.01
Vacuole -6.08 -4.59 -18.07 -10.69 -13.41 -6.83 -3.79 -15.11 -11.85 -11.79 -9.05 -5.56 -23.36 -18.11 -18.33
Vacuole Periphery -3.06 1.35 -3.03 0.92 -3.27 -2.99 3.79 0.84 3.33 -3.11 -4.21 3.80 -2.59 2.72 -4.24
Protein Complexes26S Proteasome complex37S mitochondrial small ribosomal subunit54S mitochondrial large ribosomal subunit60S cytosolic large ribosomal subunitAar2-U5 snRNPAnaphase-Promoting Complex variant 1Anaphase-Promoting Complex variant 2Anaphase-Promoting Complex variant 3Anaphase-Promoting Complex variant 4Arp2/3 complexATG1 kinase complexBLOC-1 complexCcr4-Not complexCentral kinetochore CTF19 complexCleavage and polyadenylation specificity factorcomplexCMG helicase complexCMG-Pol epsilon complexCOMPASS complexCOP9 signalosome COPI vesicle coat complexCoQ6 biosynthesis complexCore mediator complexCORVET complexCTF18-RFC complexCURI complex variant 1CURI complex variant 2CURI complex variant 3Cytoplasmic exosome complex, DIS3 variantDASH complexDNA-directed RNA Polymerase I complexDNA-directed RNA polymerase II complexDNA-directed RNA polymerase III complexDNA replication factor C complexEGO complexELG1-RFC complex Elongator holoenzyme complexEndoplasmic Reticulum Membrane ComplexEukaryotic translation initiation factor 2BcomplexEukaryotic translation initiation factor 3core complexExocystExomer complexFAR complexGeneral transcription factor complex TFIIDGeneral transcription factor complex TFIIHGET4-GET5 transmembrane domain recognition complexGID ubiquitin ligase complexGin4 complexGolgi transport complexGSE complexHMC complexHOPS complexINO80 chromatin remodeling complexLSM1-7 complexLsm1-7-Pat1 complexLSM2-7 complexLSM2-8 complexMCM complexMICOS complexMitochondrial electron transport complex IIIMitochondrial inner membrane pre-sequence translocasecomplexMitochondrial outer membrane translocase holocomplexMitochondrial proton-transporting ATP synthase complexMitochondrial pyruvate dehydrogenase complexNineTeen complexNOP8 60s ribosome pre-assembly complexNuA3 histone acetyltransferase complexNuA4 histone acetyltransferase complexNuclear condensin complexNuclear/nucleolar exosome complex, DIS3-RRP6 variantNuclear pore complexNucleolar ribonuclease MRP complexNucleolar ribonuclease P complexOligosaccharyl transferase complex variant 1Oligosaccharyl transferase complex variant 2PAF1 complexPAS complexPhosphatidylinositol 3-kinase complex IPolarisomePrefoldin complexPRP19-associated complexRad17 RFC-like complexRetromer complexRPD3L histone deacetylase complexRPD3S histone deacetylase complexRQC complexRSC complex variant RSC1RSC complex variant RSC2SAGA complexSCF-Met30 ubiquitin ligase complexSCF-Ufo1 ubiquitin ligase complexSEA complexSeptin complexSET3C histone deacetylase complexSignal recognition particleSLIK (SAGA-like) complexSmall ribosomal subunit processome, variant1Small ribosomal subunit processome, variant2Small ribosomal subunit processome, variant3SMC5-SMC6 SUMO ligase complexSm complexSpliceosomal commitment complexSPOTS complexSWI/SNF chromatin remodelling complexSwr1 chromatin remodelling complexTHO complexTranscription factor TFIIIC complexTranslocon complexTRAPPIII protein complexTRAPPII protein complexTRAPPI protein complexTREX complexU1 snRNPU2 snRNPU4 snRNPU4/U6 snRNPU4/U6.U5 tri-snRNP complexU5 snRNPU6 snRNP complexUTP-A complexUTP-B complexUTP-C complex variant 1UTP-C complex variant 2UTP-C complex variant 3Vacuolar proton translocating ATPase complex,Golgi variantVacuolar proton translocating ATPase complex,vacuole variantCellular Components••••••••••••••••actinbud neckcell peripherycytoplasmendosomeERGolgimitochondrionmixednuclear peripherynucleolusnucleusperoxisomespindle polevacuolar membranevacuole
Standard name
Human Ortholog
Description Probable DNA helicase; involved in sister-chromatid cohesion and genome integrity and interstrand cross-link repair; interacts with ECO1 and CTF18; mutants are defective in silencing, rDNA recombination, aging and the heat shock response; FANCJ-like helicase family member; mutations in the human homolog, DDX11/ChLR1, cause Warsaw breakage syndrome
Localization
Cell Percentages nucleus (16%), cytoplasm (6%), mixed (56%)
Cell Cycle Regulation Yes
cytoplasm - MA (0.00082)
Subcompartmental Group N/A

Chl1

Chl1


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)
Molecular Function (Gene Ontology)
Cellular Component (Gene Ontology)

Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Chl1-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available